Population Genetic Structure of the Threatened Amazon River Turtle, Podocnemis sextuberculata (Testudines, Podocnemididae (original) (raw)
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ContextWaterfalls and rapids of Amazon basin have been suggested as causing the speciation and genetic structure of many freshwater species, including turtles. The species behavior affects the way waterfalls and rapids limit gene flow. The Yellow-spotted River Turtle (Podocnemis unifilis), a widely distributed and endangered Amazonian turtle, does not show the habit to migrate long distances for breeding or eating, but has a complex geographic pattern of genetic variation.ObjectivesHere, we investigate isolation by distance and by resistance of P. unifilis. We analyzed if the species ecological niche and waterfalls explain the genetic distance in Brazilian Amazonia.MethodsWe evaluated the P. unifilis spatial distribution of genetic variability and diversity using the control region of mitochondrial DNA. We tested the hypotheses of isolation either by distance and resistance through an integrative approach using genetic, geographic, and ecological data. We created a resistance matrix...
Genetics and Molecular Research, 2011
The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and ©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 10 (3): 1393-1402 (2011) T.J. Silva et al. also in Colombia and Peru. This species is on the International Union for Conservation of Nature Red List in the category of vulnerable species. We examined the genetic variability and population structure of three populations represented by 64 individuals sampled from
Contributions to …, 2007
The Magdalena River Turtle (Podocnemis lewyana) is a Colombian endemic species, endangered due to human exploitation and habitat destruction. To date, this species is poorly known ecologically and data on its genetic diversity are lacking. Here we report on the fi rst genetic survey of the species across its distribution range. We obtained mitochondrial DNA sequences (488 bp) of the cytochrome b gene from 109 individuals. Samples belong to populations located at several different localities, grouped in fi ve regions, along the four main river basins: Magdalena, Cauca, San Jorge, and Sinú drainages. We found two haplotypes, which differ in only one nucleotide substitution and which are represented with different frequencies in the fi ve geographic regions. These results suggest that P. lewyana harbors little genetic variation and is a genetically uniform species, but more variable markers (i.e., microsatellites) should be used to unravel fi ne-scale phylogeographic structures in this species.
2008
We studied the population genetics of Podocnemis unifilis turtles within and among basins in the Orinoco and Amazon drainages using microsatellites. We detected high levels of genetic diversity in all sampled localities. However, 'M-ratio' tests revealed a substantial recent population decline in ten localities, in accord with current widespread exploitation. Our results reveal a consistent pattern across multiple analyses, showing a clear subdivision between the populations inhabiting the Amazon and Orinoco drainages despite a direct connection via the Casiquiare corridor, and suggesting the existence of two biogeographically independent and widely divergent lineages. Genetic differentiation followed an isolationby-distance model concordant with hypotheses about migration. It appears that migration occurs via the flooded forest in some drainages, and via river channels in those where geographic barriers preclude dispersal between basins or even among nearby tributaries of the same basin. These observations caution against making generalizations based on geographically restricted data, and indicate that geographically proximate populations may be demographically separate units requiring independent management.
Molecular Ecology Notes, 2007
We developed specific primers for microsatellite DNA regions of Podocnemis unifilis and tested their utility in population genetic and paternity studies on the species and other closely related Amazonian chelonians. Seventeen microsatellite loci were polymorphic in P. unifilis and all, plus two monomorphic microsatellites in P. unifilis, were polymorphic in at least one additional chelonian species, including Peltocephalus dumeriliana .
Genetics and Molecular Research, 2011
The chelonians are, in general, important for the economy of the traditional populations of the Amazon region, especially as a source of animal protein. Furthermore, sub-products, such as eggs and fat, are utilized in the manufacture of cosmetics, and the plastron and carapace are used in the manufacture of adornments. The freshwater turtle species Podocnemis sextuberculata, locally known as "iaçá" or "pitiú", is widely distributed in the Amazon Basin in Brazil and
Amphibia-reptilia, 2008
We used eight microsatellite loci to investigate the mating system in P. unifilis. DNA samples were collected from 66 hatchlings sampled from six nests on a central Amazon River beach near Barreirinha, Amazonas, Brazil. We found that P. unifilis females exhibited a promiscuous mating system (polyandry) with all nests being fathered by at least two males. The presence of multiple males contributing to each clutch was ascertained by the presence of at least two extra alleles in multilocus genotypes in each nest. Our data demonstrate that polyandry seems to be the prevalent system of mating in this endangered species.
Genetics and Molecular Research, 2010
The genus Podocnemis comprises six living species, including P. erythrocephala (irapuca -red-headed river turtle). Data are available concerning the reproductive biology of the species of the genus Podocnemis, but little is known about their reproductive strategies. Considering the total lack of such data for P. erythrocephala, and with the goal of contributing information on their mode of reproduction, we examined the relationships among individuals of nests of this turtle, using microsatellite markers. Using four microsatellite loci, we analyzed the progeny in six nests from two localities in the Brazilian Amazon (Santa Isabel do rio Negro and Parintins). All juveniles from each nest were analyzed. The genotypes of each juvenile from each nest were identified, and because a sample of female DNA was not available, the maternal genotype was inferred from homozygous individuals in each nest. We found that this species is promiscuous; there was multiple paternity in five of the six nests analyzed. In addition to being important for the understanding of evolutionary and genetic processes, this type of information will be useful for chelonian management projects. Our data suggest one possible ©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 9 (1): 435-440 (2010) C. Fantin et al. difference between reproductive patterns of the different populations. This multi-paternal condition may be a natural reproductive strategy for the preservation of the genetic diversity of this species.
Actu Biol, 2008
Two populations of the endangered Magdalena River turtle, Podocnemis lewyana, separated by 55 km in the Mompos Depression were sampled to quantify levels of genetic variation and inspect for evidence of genetic structure. Allozyme analyses resolved 22 presumptive gene loci, but only one resulted polymorphic. Genotype proportions at this locus departed from those expected under Hardy-Weinberg equilibrium, showing heterozygote deficiencies in both populations. However, allele frequencies at the locus did not differ between the two sites. The level of genetic variability documented is one of the lowest yet reported for a turtle species, and may reflect either a historical or recent bottleneck event. The lack of evidence for genetic structure suggests gene flow among the sites, at least historically, but the heterozygote deficiencies at each site also imply that inbreeding may be occurring presently within each deme.