Bioinformatics in Mexico: A diagnostic from the academic perspective and recommendations for a public policy (original) (raw)

Bioinformatics on a national scale: an example from Switzerland

Briefings in Bioinformatics

Switzerland has been a pioneer in the field of bioinformatics since the early 1980s. As time passed, the need for one entity to gather and represent bioinformatics on a national scale was felt and, in 1998, the SIB Swiss Institute of Bioinformatics was created. Hence, 2018 marks the Institute's 20th anniversary. Today, the Institute federates 65 research and service groups across the country-whose activity domains range from genomics, proteomics, medicine and health to structural biology, systems biology, phylogeny and evolution-and a group whose sole task is dedicated to training. The Institute hosts 12 competence centres that provide bioinformatics and biocuration expertise to life scientists across the country. SIB sensed early on that the wealth of data produced by modern technologies in medicine and the growing self-awareness of patients was about to revolutionize the way medical data are considered. In 2012, it created a Clinical Bioinformatics group to address the issue of personalized health, thus working towards a more global approach to patient management, and more targeted and effective therapies. In this respect, SIB has a major role in the Swiss Personalized Health Network to make patient-related data available to research throughout the country. The uniqueness of the Institute's governance structure has also inspired the structure of other European life science organizations, notably ELIXIR.

The past, present and future of genomics and bioinformatics: A survey of Brazilian scientists

Genetics and Molecular Biology

Brazil has one of the highest rates of scientific production, occupying the ninth position among countries with genomesequencing projects. Considering the rapid development of this research area and the diversity of professionals involved, the present study aims to understand the expectations, past experiences and the current scenario of Brazilian research in bioinformatics and genomics. The present research was carried out by analyzing the perceptions of 576 researchers in genomics and bioinformatics in Brazil through content and sentiment analysis techniques. This group of participants is equivalent to 48% of the members of the research community. The results suggest that most researchers have a positive perception of the potential of this research area. However, there is concern about the lack of funding for investing in equipment and professional training. As part of a wish list for the future, researchers highlighted the need for higher funding, formal education, and collaboration among research networks. When asked about genomics and bioinformatics in other countries, the participants recognize that sequencing technologies and infrastructure are more accessible, allowing better data volume expansion.

Regulating Mexican Biobanks for Human Biomedical Research: What Can Be Learned from the European Experience?

Biobanking presents significant governance challenges. This is especially evident in Mexico, where the legal framework has not kept up with significant industry expansion. Twenty years ago, Europe was in a similar position. More recently, Europe has developed a comprehensive framework for addressing biobank expansion within ever-growing scientific and biomedical research communities. Based on this experience, we can draw many lessons, including those involving the implementation of laws, procedures and stakeholders' consensus to ethically maximize the potential of samples. Mexican biobanking raises many issues, requiring solutions that are sensitive to its own particular needs. This article analyses the flaws of current biobanking regulations in Mexico by drawing comparisons with Europe. It pays special attention to informed consent; sample/data sharing systems; ethical tissue treatment and classification; governance models; best practices and the role of ethics committees. It argues that several European provisions regarding data protection and sharing can serve as guidelines for international research collaboration currently taking place between Mexico and Europe. resuMen. Los biobancos presentan grandes retos de reglamentación. Lo anterior es evidente en México, donde la legislación no se encuentra a la par de la creciente expansión de los biobancos. Hace veinte años, Europa se encontraba en la misma situación, pero actualmente ha desarrollado instrumentos capaces de atender tal expansión en el marco del aumento de investigación científica y biomédica. Parece haber numerosas lecciones por aprender de Europa: la materialización de leyes, procedimientos específicos y el consenso de actores para maximizar el potencial de muestras biológicas éticamente. Los biobancos mexicanos implican problemas particulares y cualquier propuesta debe responder a

A review of Bioinformatics training applied to research in Molecular Medicine, Agriculture and Biodiversity in Costa Rica and Central America

Briefings in Bioinformatics, 2013

Today, Bioinformatics has become a scientific discipline with great relevance for the Molecular Biosciences and for the Omics sciences in general. Although developed countries have progressed with large strides in Bioinformatics education and research, in other regions, such as Central America, the advances have occurred in a gradual way and with little support from the Academia, either at the undergraduate or graduate level. To address this problem, the University of Costa Rica's Medical School, a regional leader in Bioinformatics in Central America, has been conducting a series of Bioinformatics workshops, seminars and courses, leading to the creation of the region's first Bioinformatics Master's Degree. The recent creation of the Central American Bioinformatics Network (BioCANET), associated to the deployment of a supporting computational infrastructure (HPC Cluster) devoted to provide computing support for Molecular Biology in the region, is providing a foundational stone for the development of Bioinformatics in the area. Central American bioinformaticians have participated in the creation of as well as co-founded the Iberoamerican Bioinformatics Society (SOIBIO). In this article, we review the most recent activities in education and research in Bioinformatics from several regional institutions. These activities have resulted in further advances for Molecular Medicine, Agriculture and Biodiversity research in Costa Rica and the rest of the Central American countries. Finally, we provide summary information on the first Central America Bioinformatics International Congress, as well as the creation of the first Bioinformatics company (Indromics Bioinformatics), spin-off the Academy in Central America and the Caribbean.

Bioinformatics in the Netherlands: the value of a nationwide community

Briefings in Bioinformatics

This review provides a historical overview of the inception and development of bioinformatics research in the Netherlands. Rooted in theoretical biology by foundational figures such as Paulien Hogeweg (at Utrecht University since the 1970s), the developments leading to organizational structures supporting a relatively large Dutch bioinformatics community will be reviewed. We will show that the most valuable resource that we have built over these years is the close-knit national expert community that is well engaged in basic and translational life science research programmes. The Dutch bioinformatics community is accustomed to facing the ever-changing landscape of data challenges and working towards solutions together. In addition, this community is the stable factor on the road towards sustainability, especially in times where existing funding models are challenged and change rapidly.

Bioinformatic Software Developments in Spain

Lecture Notes in Computer Science, 2012

The Spanish National Bioinformatics Institute (Instituto Nacional de Bioinformática in Spanish, or short INB) is an academic service institution founded in 2003 by the mayor research groups in Spain at that time. The INB serves in the coordination, integration and development of Spanish Bioinformatics Resources in projects in the areas of genomics, proteomics and translational medicine. Its mission is to consolidate Bioinformatics as a scientific discipline, providing technical support in Bioinformatics to laboratories, institutions and companies throughout the territory. The JBI2010 conference featured two sessions, "INB Technicians internal session" and "Bioinformatic Software Developments in Spain and beyond", that introduced the state of the art of bioinformatic software developments at the INB and its role at the national and international level. This paper gives a summary of those sessions and presents an overview of the activities and contributions of the INB to the field of bioinformatics.