proteins Analyzing the effect of homogeneous frustration in protein folding (original) (raw)

Analyzing the effect of homogeneous frustration in protein folding

Vinicius Contessoto

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Quantifying Nonnative Interactions in the Protein- Folding Free-Energy Landscape

Vinicius Contessoto

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THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective

Zaida Luthey-schulten

Annual Review of Physical Chemistry, 1997

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The effect of nonnative interactions on the energy landscapes of frustrated model proteins

David Wales

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Reliable Protein Folding on Complex Energy Landscapes: The Free Energy Reaction Path

Corey Ohern

Biophysical Journal, 2008

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Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics

Samuel Cho

Proceedings of the National Academy of Sciences of the United States of America, 2009

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Correlation between rate of folding, energy landscape, and topology in the folding of a model protein HP-36

Arnab Mukherjee

The Journal of Chemical Physics, 2003

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Morphogenesis of a protein: folding pathways and the energy landscape1

Rajanish Giri

Biochemical Society …, 2012

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Dynamics, Energetics, and Structure in Protein Folding

Mourad Sadqi

Biochemistry, 2006

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Theoretical and computational studies of protein folding energy landscapes

Amedeo Caflisch

2005

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Local interactions and the optimization of protein folding.

David Baker

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Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures.

David Baker

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Non-native interactions, effective contact order, and protein folding: A mutational investigation with the energetically frustrated hydrophobic model

Leandro Garcia

Proteins-structure Function and Bioinformatics, 2002

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Analyzing energy landscapes for folding model proteins

Roy L Johnston

The Journal of Chemical Physics, 2006

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Frustration and hydrophobicity interplay in protein folding and protein evolution

Leandro Oliveira

2006

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Probing folding free energy landscape of small proteins through minimalistic models: Folding of HP-36 and β-amyloid

Arnab Mukherjee

Journal of Chemical Sciences, 2003

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Energetic Components of Cooperative Protein Folding

Hüseyin Kaya

Physical Review Letters, 2000

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Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

Eugene Shakhnovich, Leonid Mirny

Folding & design, 1996

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The Plastic Energy Landscape of Protein Folding: A TRIANGULAR FOLDING MECHANISM WITH AN EQUILIBRIUM INTERMEDIATE FOR A SMALL PROTEIN DOMAIN

Maria Selmer

Journal of Biological Chemistry, 2010

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Exploring folding free energy landscapes using computational protein design

David Baker

Current Opinion in Structural Biology, 2004

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Confinement Effects on the Thermodynamics of Protein Folding: Monte Carlo Simulations

Thomas Knotts

Biophysical Journal, 2006

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Local Interactions Dominate Folding in a Simple Protein Model

Ron Unger

Journal of Molecular Biology, 1996

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Values in protein-folding kinetics have energetic and structural components

Ken Dill

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Energetic dependencies dictate folding mechanism in a complex protein

Kaixian Liu

Proceedings of the National Academy of Sciences

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Protein folding: search for basic physical models

Robert Harrison

2003

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Folding and binding cascades: Shifts in energy landscapes

Buyong Ma

Proceedings of the National Academy of Sciences, 1999

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Experimental evidence for a frustrated energy landscape in a 3-helix bundle protein family

Fleur Bone

Nature

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Kinetics and thermodynamics of folding in model proteins

Carlos Camacho

Proceedings of the National …, 1993

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The effects of non-native interactions on protein folding rates: Theory and simulation

Cecilia Clementi

2004

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Equilibrium folding pathways for model proteins

Robert Jernigan

Journal of Statistical Physics, 1983

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Simple Physical Models Connect Theory and Experiment in Protein Folding Kinetics

Alexandre Morozov

Journal of Molecular Biology, 2002

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