original ) (raw )Modeling of the structural features of integral-membrane proteins reverse-environment prediction of integral membrane protein structure (REPIMPS
Siavoush Dastmalchi
Protein Science, 2001
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KPROT: A knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction
N. Ben-tal
Journal of Molecular Biology, 1999
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Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins
Vikas Nanda
Proteins: Structure, Function, and Bioinformatics, 2005
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Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins
Yogesh paudel
BMC Bioinformatics, 2010
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Structure-based statistical analysis of transmembrane helices
Ismael Mingarro
European Biophysics Journal, 2013
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Ez, a Depth-dependent Potential for Assessing the Energies of Insertion of Amino Acid Side-chains into Membranes: Derivation and Applications to Determining the Orientation of Transmembrane and Interfacial Helices
Vikas Nanda
Journal of Molecular Biology, 2007
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Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices
Cheng Chang-Chun Cheng
BMC Bioinformatics, 2013
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Modeling α-helical transmembrane domains: The calculation and use of substitution tables for lipid-facing residues
Dan Donnelly
Protein Science, 2008
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Method To Assess Packing Quality of Transmembrane α-Helices in Proteins. 2. Validation by “Correct vs Misleading” Test
Alexander Arseniev
Journal of Chemical Information and Modeling, 2007
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Principles governing amino acid composition of integral membrane proteins: application to topology prediction
Gábor Tusnády
Journal of Molecular Biology, 1998
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A Method to Assess Correct/Misfolded Structures of Transmembrane Domains of Membrane Proteins
Anton O Chugunov
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Principles governing amino acid composition of integral membrane proteins: application to topology …
István Simon
Journal of Molecular Biology
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Progress in structure prediction of α-helical membrane proteins
Nir Ben-tal
Current Opinion in Structural Biology, 2006
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A novel method for packing quality assessment of transmembrane α-helical domains in proteins
V. Novoseletsky
Biochemistry (Moscow), 2007
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A Comparative Study on the Ability of Two Implicit Solvent Lipid Models to Predict Transmembrane Helix Tilt Angles
Aaron T Frank
Journal of Membrane Biology, 2011
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A comprehensive computational study of amino acid interactions in membrane proteins
Sankar Basu
2019
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Progress in structure prediction of alpha-helical membrane proteins
Nir Ben-tal
Current opinion in structural biology, 2006
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On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins
Volkhard Helms
Bioinformatics, 2007
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A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins
Thijs Beuming
Bioinformatics, 2004
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A Biophysical Study of Integral Membrane Protein Folding †
Donald Engelman
Biochemistry, 1997
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Sequence context and modified hydrophobic moment plots help identify `horizontal' surface helices in transmembrane protein structure prediction
Joseph Orgel
Journal of Structural Biology, 2004
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A novel method for packing quality assessment of transmembrane alpha-helical domains in proteins
V. Novoseletsky , Anton O Chugunov
Biochemistry. Biokhimii͡a, 2007
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beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties
Ioannis Valavanis
Computational Biology and Chemistry / Computers & Chemistry, 2006
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Solution Structure, Dimerization, and Dynamics of a Lipophilic α/3 10 -Helical, C α -Methylated Peptide. Implications for Folding of Membrane Proteins
Gerd Gemmecker , Horst Kessler , Marco Crisma
Journal of the American Chemical Society, 2001
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Hydrophobic Nature of Membrane-Spanning .alpha.-Helical Peptides as Revealed by Monte Carlo Simulations and Molecular Hydrophobicity Potential Analysis
Roman Efremov
The Journal of Physical Chemistry, 1995
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Helix Packing Moments Reveal Diversity and Conservation in Membrane Protein Structure
Ashish Patel
Journal of Molecular Biology, 2004
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Relationships between the orientation and the structural properties of peptides and their membrane interactions
L. Lins
Biochimica et Biophysica Acta (BBA) - Biomembranes, 2008
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Comparing Interfacial Trp, Interfacial His and pH Dependence for the Anchoring of Tilted Transmembrane Helical Peptides
Fahmida Afrose
Biomolecules
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Structural Determinants of Transmembrane Helical Proteins
Nir Ben-tal
Structure, 2009
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