The φ29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition (original) (raw)

Insights into Strand Displacement and Processivity from the Crystal Structure of the Protein-Primed DNA Polymerase of Bacteriophage φ29

Molecular Cell, 2004

Involvement of phage 29 DNA polymerase and terminal protein subdomains in conferring specificity during initiation of protein-primed DNA replication

Nucleic Acids Research, 2007

The Essential Role of the 3′ Terminal Template Base in the First Steps of Protein-Primed DNA Replication

PLoS ONE, 2012

Initiation of phi 29 DNA replication occurs at the second 3' nucleotide of the linear template: a sliding-back mechanism for protein-primed DNA replication

Proceedings of the National Academy of Sciences, 1992

Sequence Requirements for Protein-primed Initiation and Elongation of Phage O29 DNA Replication

Jose Miguel Hermoso

Journal of Biological Chemistry, 2000

Protein-primed DNA replication: a transition between two modes of priming by a unique DNA polymerase

Juan Mendez

Embo Journal, 1997

Highly efficient DNA synthesis by the phage φ29 DNA polymerase: symmetrical mode of DNA replication

The Journal of Biological Chemistry, 1989

Protein-primed replication of bacteriophage Φ29 DNA

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1988

Motif A of bacteriophage T4 DNA polymerase: role in primer extension and DNA replication fidelity. Isolation of new antimutator and mutator DNA polymerases

L. Reha-Krantz

The Journal of biological chemistry, 1994

Characterization and Purification of a Phage phi 29Encoded DNA Polymerase Required for the Initiation of Replication

Luis Blanco

Proceedings of The National Academy of Sciences, 1984

Highly efficient DNA synthesis by the phage phi 29 DNA polymerase. Symmetrical mode of DNA replication

The Journal of Biological Chemistry, 1989

Characterization of the Origins of Replication of Bacteriophage ø29 DNA

Margarita Valenzuela Salas

Nucleic acids research, 1988

Size distribution of DNA replicative intermediates in bacteriophage P4 and in Escherichia coli

Philip Hanawalt

Journal of Molecular Biology, 1979

Interacting Fidelity Defects in the Replicative DNA Polymerase of Bacteriophage RB69

Anna Bebenek, Jim Karam

Journal of Biological Chemistry, 2001

Functional characterization of highly processive protein-primed DNA polymerases from phages Nf and GA-1, endowed with a potent strand displacement capacity

Nucleic Acids Research, 2006

Properties of the T4 bacteriophage DNA replication apparatus: The T4 dda DNA helicase is required to pass a bound RNA polymerase molecule

C. victor Jongeneel

Cell, 1983

Bacteriophage-Encoded DNA Polymerases—Beyond the Traditional View of Polymerase Activities

Karolina Zdrojewska

International Journal of Molecular Sciences, 2022

A Complex of the Bacteriophage T7 Primase-Helicase and DNA Polymerase Directs Primer Utilization

David Frick

Journal of Biological Chemistry, 2001

In VitroProtein-primed Initiation of Pneumococcal Phage Cp-1 DNA Replication Occurs at the Third 3′ Nucleotide of the Linear Template: A Stepwise Sliding-back Mechanism

Pedro García

Journal of Molecular Biology, 1996

Crystal Structure of a pol α Family Replication DNA Polymerase from Bacteriophage RB69

Jim Karam

Cell, 1997

The mechanism of DNA replication primer synthesis by RNA polymerase

Konstantin Severinov

Nature, 2006

Three-dimensional structure of the β subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp

Mike O'Donnell

Cell, 1992

Terminal protein-induced stretching of bacteriophage φ29 DNA

Sidney Grimes

Journal of Microscopy, 2004

ø29 DNA polymerase requires the N-terminal domain to bind terminal protein and DNA primer substrates

Veronica Truniger

Journal of Molecular Biology, 1998

Phage 29 and Nf terminal protein-priming domain specifies the internal template nucleotide to initiate DNA replication

Proceedings of the National Academy of Sciences, 2008

Reconstruction of bacteriophage T4 DNA replication apparatus from purified components: rolling circle replication following de novo chain initiation on a single-stranded circular DNA template

Bruce Alberts

Proceedings of the National Academy of Sciences, 1975

Dual Role of φ29 DNA Polymerase Lys529 in Stabilisation of the DNA Priming-Terminus and the Terminal Protein-Priming Residue at the Polymerisation Site

PLoS ONE, 2013

Reconstitution of a nine-protein system that initiates bacteriophage λ DNA replication

Bruce Gomes

Journal of Biological Chemistry, 1989

Pentaribonucleotides of mixed sequence are synthesized and efficiently prime de novo DNA chain starts in the T4 bacteriophage DNA replication system

Bruce Alberts

Proceedings of the National Academy of Sciences, 1980

Phage phi 29 Terminal Protein Residues Asn80 and Tyr82 Are Recognition Elements of the Replication Origins

B. Illana, Margarita Salas, Wilfried Meijer

Journal of Biological Chemistry, 1999