Supplementary data for "Stereospecific suppression of active site mutants by methylphosphonate substituted substrates reveals the stereochemical course of site-specific DNA recombination (original) (raw)

Stereospecific suppression of active site mutants by methylphosphonate substituted substrates reveals the stereochemical course of site-specific DNA recombination

Aashiq H Kachroo

Nucleic Acids Research, 2015

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Structure of Hybrid Backbone Methylphosphonate DNA Heteroduplexes: Effect of R and S Stereochemistry † , ‡

Elliott Gozansky, Varatharasa Thiviyanathan

Biochemistry, 2002

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Oxazaphosphorinane precursors to the diastereoselective synthesis of DNA phosphorothioates

Eric Marsault

Tetrahedron, 1997

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Stereospecific grignard activated coupling of a deoxynucleoside

Eric Wickstrom

Tetrahedron Letters, 1994

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Stereochemistry of internucleotide bond formation by the H-phosphonate method. Part 3: Investigations on a mechanism of asymmetric induction

Michał Sobkowski, Adam Kraszewski

Tetrahedron Asymmetry, 2007

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Stereochemistry of internucleotide bond formation by the H-phosphonate method. 7. Stereoselective formation of ribonucleoside (RP)- and (Sp)-3'-H-phosphonothioate monoesters

Michał Sobkowski, Adam Kraszewski

Tetrahedron Asymmetry, 2010

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Chemical and enzymatic properties of bridging 5'-S-phosphorothioester linkages in DNA

Eric Kool

Nucleic Acids Research, 1998

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Preparation of trimers and tetramers of mixed sequence oligodeoxynucleoside methylphosphonates and assignment of configurations at the chiral phosphorus

Eric Wickstrom

Nucleic Acids Research, 1993

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Alkyl phosphotriester modified oligodeoxyribonucleotides. V. Synthesis and absolute configuration of R p and S p diastereomers of an ethyl phosphotriester (Et) modified Eco RI recognition sequence, d[GGAA(Et)TTCC]. A synthetic approach to regio- and stereospecific ethylation-interference studies

Gerald Zon

Nucleic Acids Research, 1986

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Structural effect of complete [Rp]-phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complex 1 1Edited by I. Tinoco

Thomas James

Journal of Molecular Biology, 1999

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Rationalization of the stereochemistry of an addition of dialkyl phosphites to certain chiral aldimines: The experimental and theoretical approach

Ryszard NAZARSKI, Jarosław Lewkowski

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Phosphorothioate analogs of 2',5'-oligoadenylate. Enzymatically synthesized 2',5'-phosphorothioate dimer and trimer: unequivocal structural assignment and activation of 2',5'-oligoadenylate-dependent endoribonuclease

Robert Sobol

Biochemistry, 1987

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Structural Effect of Complete [Rp]-Phosphorothioate and Phosphorodithioate Substitutions in the DNA Strand of a Model Antisense Inhibitor-Target RNA Complex

Todd Billeci

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Stereochemistry of Internucleotide Bond Formation by the H- Phosphonate Method. 5. The Role of Brønsted and H-Bonding Base Catalysis in Ribonucleoside H- Phosphonate Condensation—Chemical and Stereochemical Consequences

Michał Sobkowski, Adam Kraszewski

Nucleosides, Nucleotides and Nucleic Acids, 2010

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Understanding base and backbone contributions of phosphorothioate DNA for molecular recognition with SBD proteins

Jiayi Li

Phys. Chem. Chem. Phys

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Synthesis of specific diastereomers of a DNA methylphosphonate heptamer, d(CpCpApApApCpA), and stability of base pairing with the normal DNA octamer d(TpGpTpTpTpGpGpC)

Eric Wickstrom

Nucleic Acids Research, 1994

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The stereospecific conversion of P-chiral dialkyl phosphorothioates into [18O]-phosphates

Paul Cullis

Tetrahedron Letters, 1983

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Interactions at the Dimer Interface Influence the Relative Efficiencies for Purine Nucleotide Synthesis and Pyrophosphorolysis in a Phosphoribosyltransferase

Francisco Medrano

Journal of Molecular Biology, 2004

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Intra- and intermolecular nucleophilic phosphorous - sulfur bond cleavage. The reaction of fluoride ion with O-aryl-O, S-dialkylphosphorothioates, & the degradation of phosphorothioate linkage in di-ribonucleotides by the vicinal 2′-hydroxyl group

Jyoti Chattopadhyaya

Tetrahedron, 1989

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The stereochemical course of phosphoryl transfer reactions of P1,P1-disubstituted pyrophosphosphates in aprotic solvents - a model for the enzyme catalyzed dissociative phosphoryl transfer

Paul Cullis

J Am Chem Soc, 1985

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Sequence- and Stereospecific Conformational Rearrangement of Styrene Oxide Adducts Located at A·C Mismatched Base Pairs

mario simeonov

Biochemistry, 2000

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P-chiral thioxophosphoranesulfenyl chlorides RR'P(S)SCL. A unique stereochemical probe to study nucleophilic displacement at a dicoordinate sulfur center

Lech Luczak

Tetrahedron, 1998

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Deoxyxylothymidine 3′-O-phosphorothioates: Synthesis, stereochemistry and stereocontrolled incorporation into oligothymidylates

Konrad Misiura

Bioorganic & Medicinal Chemistry Letters, 1997

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Impact of Pyrophosphate and O -Ethyl-Substituted Pyrophosphate Groups on DNA Structure

Murat Saparbaev, Anastasia Bochenkova

The Journal of Physical Chemistry B, 2007

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Formation of phosphonester bonds catalyzed by DNA polymerase

Marina Kukhanova

Nucleic Acids Research, 1992

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Enhanced P-stereodependent stability of complexes formed by phosphorothioate oligonucleotides due to involvement of sulfur as strong hydrogen bond acceptor

Magda Janicka

Pure and Applied Chemistry, 2000

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Steroselective interaction with chiral phosphorothioates at the central DNA kink of the EcoRI endonuclease-GAATTC complex

Linda Jen-Jacobson

Journal of Biological Chemistry

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Involvement of the Arg−Asp−His Catalytic Triad in Enzymatic Cleavage of the Phosphodiester Bond †

Robert Kubiak

Biochemistry, 2001

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Structure of S-phenyl O-3'-thymidinyl methylphosphonothioate

Wolfgang Brill

1989

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Duplex stabilities of phosphorothioate, methylphosphonate, and RNA analogs of two DNA 14-mers

Gerald Zon, Laura Kibler-herzog

Nucleic Acids Research, 1991

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Absolute configuration ofRp-uridine 3′,5′-cyclic phosphorothioate

Wolfram Saenger

Nucleic Acids Research, 1987

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Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety

Irene Gómez-pinto, Nico Meeuwenoord

Nucleic Acids Research, 2001

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Cross-Hetero-Dehydrogenative Coupling Reaction of Phosphites: A Catalytic Metal- Free Phosphorylation of Amines and Alcohols

Antonio Regla

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Tuning of the Structures of Chiral Phosphane-Phosphites: Application to the Highly Enantioselective Synthesis of α-Acyloxy Phosphonates by Catalytic Hydrogenation

Miguel Rubio

Chemistry - A European Journal, 2007

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