Changes of nucleosome frequency in nucleolar and non-nucleolar chromatin as a function of transcription: an electron microscopic study (original) (raw)
Abstract
The morphology of nucleolar and non-nucleolar (Iampbrush chromosome loops) chromatin was studied in the electron microscope during states of reduced transcriptional activity in amphibian oocytes (Xenopus laevis, Triturus alpestris, T. cristatus). Reduced transcriptional activity was observed in maturing stages of oocyte development and after treatment with an inhibitor, actinomycin D. Strands of nucleolar chromatin appear smooth and thin, and contain only few, if any, nucleosomal particles in the transcribed units. This is true whether they are densely or only sparsely covered with lateral ribonucleoprotein fibrils. This smooth and non-nucleosomal character is also predominant in the interspersed, apparently nontranscribed rDNA spacer regions. During inactivation, however, nucleolar chromatin frequently and progressively assumes a beaded appearance in extended fibril-free-that is, apparently nontranscribed-regions. I n either fUll-grown 00cytes or late after drug treatment, most of the nucleolar chromatin is no longer smooth and thin, but rather shows a beaded configuration indistinguishable from inactive non-nucleolar chromatin. In many chromatin strands, transitions of fibril-associated regions of smooth character into beaded regions wihout lateral fibrils are seen. Similarly, in the non-nucleolar chromatin of the retracting lampbrush chromosome loops, reduced transcriptional activity is correlated with a change from smooth to beaded morphology. Here, however, beaded regions are also commonly found interspersed between the more or less distant bases of the lateral fibrils, the putative transcriptional complexes. I n both sorts of chromatin, detergents (in particular Sarkosyl) that remove most of the chromatin proteins including histones from the DNA axis but leave the RNA polymerases of the transcriptional complexes attached were used to discriminate between polymerases and nucleosomal particles. The results suggest that nucleosomes are absent in heavily transcribed chromatin regions but are reformed after inactivation. In contrast to the findings with inactivated nucleolar genes, in lampbrush chromosome loops the beaded nucleosomal configuration appears to be assumed also in regions within transcriptional units that, perhaps temporarily, are not involved in transcription.
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References (59)
- Angelier, N. and Lacroix , J . C. (1975). Complexes de transcription d'origines nucleolaire et chromosomique d'ovocytes de Pleuro- deles waltlii et P. poireti. Chromosoma 51,323-335.
- Bellard, M ., Gannon, F. and Chambon, P. (1977). Nucleosome structure. Ill. Are actively transcribed genes compacted in nucleo- somes? Cold Spring Harbor Symp. Quant. BioI. 42, in press.
- Bina-Stein, M. and Simpson, R. T. (1977) . Specific folding and contraction of DNA by histones H3 and H4. Cell 11,609-618.
- Brown, I., Heikkila, J., Silver , J. and Straus, N. (1977). Organiza- tion and transcriptional activity of brain chromatin subunits. Biochim. Biophys. Acta 477,288-294.
- Burton, K. (1968). Determination of DNA concentration with diphenylamine. In Methods in Enzymology, 128, L. Grossman and K. Moldave, eds. (New York : Academic Press), pp. 163-166.
- Corden, J, Engelking, H. M. and Pearson, G. D. (1976). Chroma- tin-like organization of the adenovirus chromosome. Proc. Nat. Acad. Sci. USA 73, 401-404.
- Davidson, E. H. (1976). Gene Activity in Early Development (New York: Academic Press).
- Finch, J. T., Lutter, L. C., Rhodes, D ., Brown, R. S., Rushton, B., Levitt, M. and Klug , A. (1977). Structure of nucleosome core particles of chromatin. Nature 269,29-36.
- Franke, W. W., Scheer , U., Trendelenburg , M. F., Spring, H. and Zentgraf, H. (1976a). Absence of nucleosomes in transcriptionally active chromatin. Cytobiologie 13,401-434.
- Franke , W. W., Scheer, U., Spring, H., Trendelenburg, M. F. and Krohne, G. (1976b). Morphology of transcriptional units of rDNA. Exp . Cell Res. 100, 233-244.
- Foe, V. E. (1977) Chromatin structure and transcriptional activity: an electron microscopic study of rRNA synthesis. Cold Spring Harbor Symp. Quant. Bioi. 42, in press.
- Foe, V. E., Wilkinson, L. E. and Laird , C. D. (1976). Comparative organization of active transcription units in Oncopeltus fasciatus. Cell 9,131-146.
- Garel, A. and Axel, R. (1976) . Selective digestion of transcription- ally active ovalbumin genes from oviduct nuclei. Proc. Nat. Acad. Sci. USA 73,3966-3970.
- Gariglio, P. , Buss, J. and Green, M. H . (1974). Sarkosyl activation of RNA polymerase activity in mitotic mouse cells. FEBS Letters 44,330-333.
- Gottesfeld , J. M., Murphy, R. F. and Bonner, J. (1975). Structure of transcriptionally active chromatin. Proc. Nat. Acad. Sci. USA 72, 4404-4408.
- Green, M. H., Buss , J. and Gariglio, P. (1975). Activation of nuclear RNA polymerase by Sarkosyl. Eur. J. Biochem. 53 , 217- 225. Jackson, V. and Chalkley, R. (1975). The effect of urea on staphylococcal nuclease digestion of chromatin. Biochem. Bio- phys. Res Commun. 67 , 1391-1400.
- Kierszenbaum, A. L. and Tres, l. L. (1975). Structural and tran- scriptional features of the mouse spermatid genome. J. Cell BioI. 65,258-270.
- Kleiman, L. and Huang, R. C. C. (1971). Binding of actinomycin D to calf thymus chromatin. J . Mol. BioI. 55,503-521.
- Kornberg, R. D. (1974). Chromatin structure: a repeating unit of histones and DNA. Science 184 , 868-871.
- Kornberg, R. D. (1977) . Structure of chromatin . Ann. Rev . Bio- chem. 46,931-954.
- Krliger, C. and Seifart, K. H. (1977). RNA polymerases during differentiation of avian erythrocytes. Exp. Cell Res. 106 , 446-450 .
- Kuo, M. T., Sahasrabuddhe, C. G. and Saunders, G. F. (1976). Presence of messenger specifying sequences in the DNA of chromatin subunits. Proc. Nat. Acad. Sci. USA 73,1572-1575.
- Lacy, E. and Axel, R. (1975). Analysis of DNA of isolated chroma- tin subunits. Proc. Nat. Acad. Sci. USA 72,3978-3982.
- Laird, C. D., Wilkinson, L. E., Foe, V. E. and Chooi, W. Y . (1976). Analysis of chromatin-associated fiber arrays. Chromosoma 58, 169-192.
- Lowry, O. H., Rosebrough, N. J., Farr, A. L. and Randall, R. J. (1951). Protein measurement with the folin phenol reagent. J. BioI. Chem. 193, 265-275.
- McKnight, S. L. and Miller, O. l., Jr. (1976). Ultrastructural patterns of RNA synthesis during early embryogenesis of Dro- sophila melanogaster. Cell 8, 305-319.
- McKnight, S. l., Sullivan, N. L. and Miller, O. L. (1976). Visualiz- ation of the silk fibroin transcription unit and nascent silk fibroin molecules on polyribosomes of Bombyx mori. In Progress in Nucleic Acid Research and Molecular Biology, 19, W. E. Cohn and E. Volkin, eds. (New York: Academic Press), p. 313-318 .
- McKnight, S. L., Bustin, M. and Miller, O. L. (1977). Electron microscopic analysis of chromosome metabolism in the Drosoph- ila melanogaster embryo. Cold Spring Harbor Symp. Quant. BioI. 42, in press.
- Mathis, D. J. and Gorovsky, M. A. (1976). Subunit structure of rDNA-containing chromatin. Biochemistry 15,750-755.
- Miller, O. L. and Beatty, B. R. (1969). Visualization of nucleolar genes. Science 164, 955-957.
- Miller, O. L. and Bakken, A. H. (1972). Morphological studies of transcription. Acta Endocrinol. Suppl. 168, 155-177.
- Miller, O. L. and Hodge, L. D. (1975). Visualization of a unique nuclear adenovirus DNA-protein complex. J. Cell BioI. 67, 284a.
- Muller, U., Zentgraf, H., Eicken, I. and Keller, W. (1977). Higher- order structure of simian virus 40 chromatin. Science, in press .
- Ohlenbusch, H. H., Olivera, B. M., Tuan, D. and Davidson, N. (1967). Selective dissociation of histones from calf thymus nu- cleoprotein.J. Mol. BioI. 25, 299-315.
- Olins, A. L. and Olins, D. E. (1974). Spheroid chromatin units (v bodies). Science 183, 330-332.
- Olins, D. E., Bryan, P. N., Harrington, R. E., Hill, W. E. and Olins, A. L. (1977). Conformational states of chromatin v bodies induced by urea. Nucl. Acids Res. 4,1911-1931.
- Oudet, P., Gross-Bellard, M. and Chambon, P. (1975). Electron microscopic and biochemical evidence that chromatin structure is a repeating unit. Cell 4, 281-300.
- Oudet, P., Spadafora, C. and Chambon, P. (1977). Nucleosome structure . 11. Structure of SV40 minichromosome and electron microscopic evidence that a nucleosome could be constituted of two half nucleosomes. Cold Spring Harbor Symp. Quant. BioI. 42, in press.
- Piper, P. W ., Celis, J., Kaltoft, K., Leer, J. C., Nielsen, O. F. and Westergaard, O. (1976). Tetrahymena ribosomal RNA gene chro- matin is digested by micrococcal nuclease at sites which have the same regular spacing on the DNA as corresponding sites in the bulk nuclear chromatin. Nucl. Acids Res. 3,493-505 .
- Puvion-Dutilleul, F., Bernadac, A., Puvion, E. and Bernhard, W. (1977). Visualization of two different types of nuclear transcrip- tional complexes in rat liver cells . J. Ultrastruct. Res. 58,108-117.
- Rattner, J. B., Branch, A. and Hamkalo, B. A. (1975). Electron microscopy of whole mount metaphase chromosomes. Chromo- soma 52, 329-338.
- Reeves, R. (1976). Ribosomal genes of Xenopus laevis: evidence of nucleosomes in transcriptionally active chromatin. Science 194, 529-532.
- Reeves, R. (1977). Analysis and reconstruction of Xenopus ribo- somal chromatin nucleosomes. Eur. J. Biochem. 75, 545-560.
- Reeves, R. and Jones, A. (1976). Genomic transcriptional activity and the structure of chromatin. Nature 260,495-500.
- Rungger, D. and Crippa, M. (1977). The primary ribosomal DNA transcript in eukaryotes. Prog. Biophys. Mol. BioI. 31, 247-269.
- Scheer, U., Trendelenburg, M. F. and Franke, W. W. (1973). Transcription of ribosomal RNA cistrons. Exp. Cell Res. 80, 175- 190. Scheer, U., Trendelenburg, M. F. and Franke, W. W. (1975). Effects of actinomycin D on the association of newly formed ribonucleoproteins with the cistrons of ribosomal RNA in Triturus oocytes. J. Cell BioI. 65,163-179.
- Scheer, U., Franke, W. W., Trendelenburg, M. F. and Spring, H. (1976a). Classification of loops of lampbrush chromosomes ac- cording to the arrangement of transcriptional complexes. J. Cell Sci. 22, 503-520.
- Scheer, U., Trendelenburg, M. F. and Franke, W. W. (1976b). Regulation of transcription of genes of ribosomal RNA during amphibian oogenesis. J. Cell BioI. 69,465-489.
- Scheer, U., Trendelenburg, M. F., Krohne, G. and Franke, W. W. (1977). Lengths and patterns of transcriptional units in the ampli- fied nucleoli of oocytes of Xenopus laevis. Chromosoma 60, 147- 167. Snow, M. H. and Callan, H. G. (1969). Evidence for a polarized movement of the lateral loops of newt lampbrush chromosomes during oogenesis. J. Cell Sci. 5, 1-25.
- Sollner-Webb, B., Camerini-Otero, R. D. and Felsenfeld, G. (1976). Chromatin structure as probed by nucieases and pro- teases: evidence for the central role of histones H3 and H4. Cell 9, 179-193.
- Thomas, J. O. and Kornberg, R. D. (1975). An octamer of histones in chromatin and free in solution. Proc. Nat. Acad. Sci. USA 72, 2626-2630.
- Trendelenburg, M. F., Scheer, U., Zentgraf , H. and Franke, W. W. (1976). Heterogeneity of spacer lengths in circles of amplified ribosomal DNA of two insect species, Dytiscis marginalis and Acheta domesticus. J. Mol. Bioi. 108, 453-470.
- Tsanev, R. and Petrov, P. (1976). The substructure of chromatin and its variations as revealed by electron microscopy. J. Micros- copie BioI. Cell. 27,11-18.
- Tuan, D. Y. H. and Bonner, J. (1969). Optical absorbance and optical rotatory dispersion studies on calf thymus nucleohistone. J. Mol. BioI. 45,59-76.
- Weintraub, H. and Groudine, M. (1976). Chromosomal subunits in active genes have an altered conformation. Science 193, 848- 856. Weintraub, H., ~orcel, A. and Alberts, B. (1976). A model for chromatin based upon two symmetrically paired half-nucleo- somes. Cell 9, 409-417.
- Woodcock, C. L. F. and Frado, L. L. Y. (1977). Ultrastructure of chromatin subunits during unfolding, histone depletion and re- constitution. Cold Spring Harbor Symp. Quant. BioI. 42, in press .
- Woodcock, C. L. F., Safer, J. P. and Stanchfield, J. E. (1976a). Structural repeating units in chromatin. Exp. Cell Res. 97, 101- 110. Woodcock, C. L. F., Frado, L. L. Y., Hatch, C. L. and Ricciardiello, L. (1976b). Fine structure of active ribosomal genes. Chromo- soma 58,33-39.
- Zentgraf, H., Deumling, B., Jarasch, E.-D. and Franke, W. W. (1971). Nuclear membranes and plasma membranes from hen erythrocytes. J. Bioi. Chem. 246,2986-2995.
- Zentgraf, H., Scheer, U. and Franke , W. W. (1975). Characteriza- tion and localization of the RNA synthesized in mature avian erythrocytes. Exp. Cell Res. 96,81-95.