Transition Path Times for DNA and RNA Folding from Force Spectroscopy (original) (raw)

Transition Path Times for Nucleic Acid Folding Determined from Energy-Landscape Analysis of Single-Molecule Trajectories

Krishna Neupane

Physical Review Letters, 2012

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Probing Position-Dependent Diffusion in Folding Reactions Using Single-Molecule Force Spectroscopy

Andrew Pyo

Biophysical journal, 2018

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Force-Dependent Folding and Unfolding Kinetics in DNA Hairpins Reveals Transition-State Displacements along a Single Pathway

Felix Ritort

The journal of physical chemistry letters, 2017

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Quantifying Instrumental Artifacts in Folding Kinetics Measured by Single-Molecule Force Spectroscopy

Krishna Neupane

Biophysical Journal

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Mapping the Energy Landscape of Biomolecules Using Single Molecule Force Correlation Spectroscopy: Theory and Applications

Valeri Barsegov

Biophysical Journal, 2006

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Determining intrachain diffusion coefficients for biopolymer dynamics from single-molecule force spectroscopy measurements

Kevin S D Beach

Biophysical Journal, 2014

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Measuring the Local Velocity along Transition Paths during the Folding of Single Biological Molecules

Krishna Neupane

Physical Review Letters

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Fast Folding of an RNA Tetraloop on a Rugged Energy Landscape Detected by a Stacking-Sensitive Probe

Anurag Sethi

Biophysical Journal, 2009

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Observing the base-by-base search for native structure along transition paths during the folding of single nucleic acid hairpins

Krishna Neupane

Proceedings of the National Academy of Sciences, 2021

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Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes

Alessandro Mossa

Journal of Statistical Mechanics-theory and Experiment, 2009

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Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation

Felix Ritort

Journal of Statistical Mechanics: Theory and Experiment, 2009

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A two-state kinetic model for the unfolding of single molecules by mechanical force

Felix Ritort

Proceedings of the National Academy of Sciences, 2002

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Energy Landscapes, Folding Mechanisms, and Kinetics of RNA Tetraloop Hairpins

debayan chakraborty

Journal of the American Chemical Society, 2014

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Probing the Mechanical Folding Kinetics of TAR RNA by Hopping, Force-Jump, and Force-Ramp Methods

carlos bustamante

Biophysical Journal, 2006

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Extracting Kinetics from Single-Molecule Force Spectroscopy: Nanopore Unzipping of DNA Hairpins

Amit Meller

Biophysical Journal, 2007

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Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements

Abhilash Vincent

Nature Physics, 2011

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Probing Static Disorder in Protein Unfolding and Chemical Reactions by Single-Molecule Force Spectroscopy

Tzu-Ling Kuo

2011

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Experimental Validation of Free Energy Landscape Reconstructions from Non-Equilibrium Single-Molecule Pulling Experiments

Abhilash Vincent

Biophysical Journal, 2011

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Probing the Kinetics of Single Molecule Protein Folding

Vitor Barbanti Pereira Leite

Biophysical Journal, 2004

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Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates

Krishna Neupane

2012

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Probing complex RNA structures by mechanical force

Jean-François Léger

The European Physical Journal E - Soft Matter, 2003

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Folding and unfolding of a triple-branch DNA molecule with four conformational states

Felix Ritort

Philosophical Magazine, 2011

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Transition-Path Probability as a Test of Reaction-Coordinate Quality Reveals DNA Hairpin Folding Is a One-Dimensional Diffusive Process

Krishna Neupane

The Journal of Physical Chemistry Letters, 2015

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Efficient methods for determining folding free energies in single-molecule pulling experiments

Felix Ritort

Journal of Statistical Mechanics: Theory and Experiment, 2019

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Dynamics, Energetics, and Structure in Protein Folding

Mourad Sadqi

Biochemistry, 2006

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Direct Observation of the Three-State Folding of a Single Protein Molecule

ciro cecconi

Science, 2005

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Force-induced misfolding in RNA

Felix Ritort

Physical Review E, 2008

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Multiple native states reveal persistent ruggedness of an RNA folding landscape

Sergey Solomatin

Nature, 2010

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Combining Temperature and Force to Study Folding of Single RNA Molecules

Michael Zuker, Scott Tenenbaum

Biophysical Journal, 2013

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Equilibrium Properties and Force-Driven Unfolding Pathways of RNA Molecules

Alessandro Pelizzola

Physical Review Letters, 2009

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Kinetics of chain motions within a protein-folding intermediate

Hannes Neuweiler

Proceedings of the National Academy of Sciences, 2010

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Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism

Krishna Neupane

Nucleic Acids Research, 2011

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Hands-on force spectroscopy: weird springs and protein folding

Manfred Euler

Physics Education, 2008

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An energetic model for macromolecules unraveling

Giuseppe puglisi

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Direct measurement of sequence-dependent transition path times and conformational diffusion in DNA duplex formation

Krishna Neupane

Proceedings of the National Academy of Sciences of the United States of America, 2017

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