Solution structure of a GAAA tetraloop receptor RNA (original) (raw)
RNA Helical Packing In Solution: NMR Structure of a 30 KDa GAAA Tetraloop-Receptor Complex
Samuel Butcher
Journal of molecular …, 2005
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Structural Variation and Uniformity among Tetraloop-Receptor Interactions and Other Loop-Helix Interactions in RNA Crystal Structures
Marie Fraser
PLoS ONE, 2012
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Thermodynamics and Folding Pathway of Tetraloop Receptor-Mediated RNA Helical Packing
Samuel Butcher
Journal of Molecular Biology, 2008
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An eight-stranded helical fragment in RNA crystal structure: implications for tetraplex interaction
baocheng pan
Structure (London, England : 1993), 2003
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Crystal Structure of a Bulged RNA Tetraplex at 1.1 Å Resolution
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A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III
Guillaume Chanfreau
The EMBO Journal, 2001
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Monovalent and Divalent Promoted GAAA Tetraloop-Receptor Tertiary Interactions from Freely Diffusing Single-Molecule Studies
Jose Hodak
Biophysical Journal, 2008
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A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor
Soumitra Basu
Nature Structural Biology, 1998
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Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation
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Journal of molecular modeling, 2017
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Recognition Modes of RNA Tetraloops And Tetraloop-Like Motifs By RNA Binding Proteins
J. Rice, Roopa Thapar
Wiley Interdisciplinary Reviews: RNA, 2013
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Binding of an aminoacridine derivative to a GAAA RNA tetraloop
Anne Baranger
Bioorganic & Medicinal Chemistry Letters, 2004
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Tecto-RNA: One-Dimensional Self-Assembly through Tertiary Interactions
Neocles Leontis
Angewandte Chemie-international Edition, 2000
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Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
Guillaume Chanfreau
Proceedings of The National Academy of Sciences, 2004
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The 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction
Sophie Bombard
RNA, 2007
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Incorporating a Thiophosphate Modification into a Common RNA Tetraloop Motif Causes an Unanticipated Stability Boost
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Structure of a Folding Intermediate Reveals the Interplay Between Core and Peripheral Elements in RNA Folding
Eric Westhof
Journal of Molecular Biology, 2005
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Solution conformation of a bulged adenosine base in an RNA duplex by relaxation matrix refinement
Varatharasa Thiviyanathan
Journal of Molecular Biology, 2000
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Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G·A Pairs
Thomas Kaukonen
Biochemistry, 2019
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Crystal Structure of an RNA Purine-Rich Tetraplex Containing Adenine Tetrads
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Annotation of tertiary interactions in RNA structures reveals variations and correlations
Tamar Schlick
RNA, 2008
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Force field based conformational analysis of RNA structural motifs: GNRA tetraloops and their pyrimidine relatives
Peter Schuster
European Biophysics Journal, 1999
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Responsive self-assembly of tectoRNAs with loop–receptor interactions from the tetrahydrofolate (THF) riboswitch
Wade Grabow
Nucleic Acids Research, 2019
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The Ligand-Free State of the TPP Riboswitch: A Partially Folded RNA Structure
Mona Ali
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Structure and dynamics of adenosine bulged RNA duplex reveals formation of the dinucleotide platform in the C:G-A triple
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Arkivoc Archive For Organic Chemistry, 2008
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Cation-Specific Structural Accommodation within a Catalytic RNA
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Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations
Abhijit Mitra
The Journal of Physical Chemistry B, 2009
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A Network of Heterogeneous Hydrogen Bonds in GNRA Tetraloops
Fiona Jucker, Ellen Moors
Journal of Molecular Biology, 1996
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Crystal structure of an adenine bulge in the RNA chain of a DNA·RNA hybrid, d(CTCCTCTTC)·r(gaagaggag)
C. Sudarsanakumar
Journal of Molecular Biology, 2000
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Conformity of RNAs that interact with tetranucleotide loop binding proteins
Christian Zwieb
Nucleic Acids Research, 1992
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RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop1?
Mark Engelhardt, Eric Sorin
Journal of Molecular Biology, 2002
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Quantum chemical studies of structures and binding in noncanonical RNA base pairs: the trans Watson-Crick: Watson-Crick family.
Abhijit Mitra
… structure & dynamics, 2008
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The crystal structure of an RNA oligomer incorporating tandem adenosine- inosine mismatches
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An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs
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Proceedings of the National Academy of Sciences, 2005
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Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage
Nassim Usman
Chemistry & Biology, 1996
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