Multi-domain Packing in the Aminoacylatable 3′ End of a Plant Viral RNA (original) (raw)

A central pseudoknotted three-way junction imposes tRNA-like mimicry and the orientation of three 5' upstream pseudoknots in the 3' terminus of tobacco mosaic virus RNA

Eric Westhof

Rna, 1996

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J. Kieft

RNA, 2009

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J. Kieft

Nature, 2014

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Valylation of tRNA-like transcripts from cloned cDNA of turnip yellow mosaic virus RNA demonstrate that the L-shaped region at the 3′ end of the viral RNA is not sufficient for optimal aminoacylation

Richard Giegé

Biochimie, 1988

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The amazing diversity of cap-independent translation elements in the 3′-untranslated regions of plant viral RNAs

Krzysztof Treder

Biochemical Society Transactions, 2007

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tRNA elements mediate the assembly of an icosahedral RNA virus

A. L.. N. RAO

2002

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Structural Plasticity and Rapid Evolution in a Viral RNA Revealed by In Vivo Genetic Selection

Wai Lin

Journal of Virology, 2008

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A phylogenetically conserved sequence within viral 3' untranslated RNA pseudoknots regulates translation

Robert L Tanguay

Molecular and cellular biology, 1993

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Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection

Eric Jan

Proceedings of the National Academy of Sciences of the United States of America, 2015

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RNA pseudoknot domain of tobacco mosaic virus can functionally substitute for a poly(A) tail in plant and animal cells

Virginia Walbot

Genes & Development, 1990

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The tRNA-Uke structure at the 3′ terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA

Krijn Rietveld

Nucleic Acids Research, 1982

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Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation

Daniel Van Damme

Nucleic Acids Research, 2004

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Ribosome-induced RNA conformational changes in a viral 3′-UTR sense and regulate translation levels

J. Kieft

Nature Communications

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Ribosome Binding to a 5' Translational Enhancer Is Altered in the Presence of the 3' Untranslated Region in Cap-Independent Translation of Turnip Crinkle Virus

Jonathan Dinman

Journal of Virology, 2011

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Search of essential parameters for the aminoacylation of viral tRNA-like molecules. Comparison with canonical transfer RNAs

Richard Giegé

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1990

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The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits

Jonathan Dinman

RNA, 2008

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Selection of Viral RNA-Derived tRNA-Like Structures with Improved Valylation Activities †

Richard Giegé

Biochemistry, 2000

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Efficient mischarging of a viral tRNA-like structure and aminoacylation of a minihelix containing a pseudoknot: histidinylation of turnip yellow mosaic virus RNA

Richard Giegé

Nucleic Acids Research, 1992

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Specific valylation identity of turnip yellow mosaic virus RNA by yeast valyl-tRNA synthetase is directed by the anticodon in a kinetic rather than affinity-based discrimination

Richard Giegé

European Journal of Biochemistry, 1991

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A Stem-Loop Structure in Potato Leafroll Virus Open Reading Frame 5 (ORF5) Is Essential for Readthrough Translation of the Coat Protein ORF Stop Codon 700 Bases Upstream GENOME REPLICATION AND REGULATION OF VIRAL GENE EXPRESSION crossm Downloaded from

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Non-canonical Translation in Plant RNA Viruses

Veronica Truniger

Frontiers in plant science, 2017

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Cap- and initiator tRNA-dependent initiation of TYMV polyprotein synthesis by ribosomes: Evaluation of the Trojan horse model for TYMV RNA translation

Theo Dreher

RNA, 2006

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A Physical Interaction between Viral Replicase and Capsid Protein Is Required for Genome-Packaging Specificity in an RNA Virus

A. L.. N. RAO

2012

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Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus

Jonathan Dinman

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Deletion of Highly Conserved Arginine-Rich RNA Binding Motif in Cowpea Chlorotic Mottle Virus Capsid Protein Results in Virion Structural Alterations and RNA Packaging Constraints

Swapna Apte

Journal of Virology, 2005

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An RNA Element that Facilitates Programmed Ribosomal Readthrough in Turnip Crinkle Virus Adopts Multiple Conformations

Micki Kuhlmann

Journal of virology, 2016

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RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structures

Manju Bansal

Briefings in Bioinformatics, 2019

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Poly(A)-Binding Protein Facilitates Translation of an Uncapped/Nonpolyadenylated Viral RNA by Binding to the 3' Untranslated Region

Kazuyuki Mise

Journal of Virology, 2012

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Interaction with Capsid Protein Alters RNA Structure and the Pathway for In Vitro Assembly of Cowpea Chlorotic Mottle Virus

Adam Zlotnick

Journal of Molecular Biology, 2004

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Functional analysis of the tobacco mosaic virus tRNA-like structure in cytoplasmic gene regulation

John Feder

Nucleic Acids Research, 1991

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The 3\u27 untranslated region of a plant viral RNA directs efficient cap-independent translation in plant and mammalian systems

Krzysztof Treder

2019

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Host-dependent roles of the viral 5′ untranslated region (UTR) in RNA stabilization and cap-independent translational enhancement mediated by the 3′ UTR of Red clover necrotic mosaic virus RNA1

Masanori Kaido

Virology, 2009

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Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging

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Scientific Reports, 2016

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Structural and functional analyses of the 3' untranslated region of Bamboo mosaic virus satellite RNA

Ching-Hsiu Tsai

Virology, 2009

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In Vivo Packaging of Brome Mosaic Virus RNA3, but Not RNAs 1 and 2, Is Dependent on a cis-Acting 3' tRNA-Like Structure

A. L.. N. RAO

Journal of Virology, 2007

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