Structure‐based design of model proteins (original) (raw)

Principles for designing ideal protein structures

David Baker

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Theoretical and Computational Protein Design

Chris MacDermaid, Ilan Samish

Annual Review of Physical Chemistry, 2011

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Nanostructure Design Using Protein Building Blocks Enhanced by Conformationally Constrained Synthetic Residues

Carlos Alemán

Biochemistry, 2007

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A novel iterative strategy for protein design

Andrea Maritan

Chemical Physics, 2000

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De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity

Benjamin Groves

Science (New York, N.Y.), 2016

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Computer-Aided Conformation-Dependent Design of Copolymer Sequences

Pavel Khalatur

Advances in Polymer Science, 2006

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Designing Misfolded Proteins by Energy Landscaping

Parbati Biswas

The Journal of Physical Chemistry B, 2011

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Conformation-dependent sequence design: evolutionary approach

Pavel Khalatur, Elena Govorun

The European Physical Journal E - Soft Matter, 2004

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Energy functions in de novo protein design: current challenges and future prospects

Yaoqi Zhou

Annual review of biophysics, 2013

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Advances In Computational Protein Design

Sheldon Park

Current Opinion in Structural Biology, 2004

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Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations

Yaoqi Zhou

Biochemistry, 2009

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Computational protein design promises to revolutionize protein engineering

Oscar Alvizo

Biotechniques, 2007

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Highly designable protein structures and inter-monomer interactions

Hamed Seyed-allaei

Journal of Physics A: Mathematical and General, 1998

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Designability of protein structures: A lattice-model study using the Miyazawa-Jernigan matrix

Chao Tang

Proteins: Structure, Function, and Genetics, 2002

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Sequence-structure relationships in proteins and copolymers

Ken Dill

Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, 1993

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Protein engineering structure and design, prediction and evolution: cycling to success

John Tainer

Current Opinion in Biotechnology, 1998

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Incorporating receptor flexibility in the molecular design of protein interfaces

Meaghan Pilcher

Protein Engineering Design and Selection, 2009

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Folding and Misfolding of Designed Heteropolymer Chains with Mutations

Guido Tiana

1997

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Achievements and Challenges in Computational Protein Design

Ilan Samish

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In silico protein design by combinatorial assembly of protein building blocks

Buyong Ma

Protein Science, 2009

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A minimum set of stable blocks for rational design of polypeptide chains

A. Anashkina

Biochimie

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Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

David Baker

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Computational design of proteins stereochemically optimized in size, stability, and folding speed

Sadhna Joshi

Biopolymers, 2006

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A minimum set of stable blocks for rational design of polypeptide chains Running head: A set of stable blocks for protein rational design

Rudolf Pogosyan

2019

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Protein Design in a Lattice Model of Hydrophobic and Polar Amino Acids

Flavio Seno

Physical Review Letters, 1998

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The Framework of Computational Protein Design

Ilan Samish

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Computational approaches toward Protein Design

Sophie Barbe

2016

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Structural evolution of proteinlike heteropolymers

Erik D Nelson

Physical Review E, 2014

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Recent Progress Using De Novo Design to Study Protein Structure, Design and Binding Interactions

Lee Solomon

Life

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Molecular dynamics simulation of the synthesis of protein-like copolymers via conformation-dependent design

Pavel Khalatur

New Journal of Physics, 2004

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The Designability of Protein Structures

Robert Helling

Journal of Molecular …, 2001

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