Nuclear Magnetic Resonance Structure of the Varkud Satellite Ribozyme Stem−Loop V RNA and Magnesium-Ion Binding from Chemical-Shift Mapping † , ‡ (original) (raw)

NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site

B. Hoffmann, Pascale Legault

Proceedings of the National Academy of Sciences, 2003

View PDFchevron_right

Insights into RNA structure and dynamics from recent NMR and X-ray studies of the Neurospora Varkud satellite ribozyme

Pascale Legault

Wiley interdisciplinary reviews. RNA, 2017

View PDFchevron_right

Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg(2+) Bound Structure in the Presence of Monovalent Ions

Kathleen Hall

The journal of physical chemistry. B, 2015

View PDFchevron_right

NMR structure of the A730 loop of the Neurospora VS ribozyme: insights into the formation of the active site

Pascale Legault

Nucleic Acids Research, 2011

View PDFchevron_right

Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme 1 1Edited by D. Draper

Richard Collins III

Journal of Molecular Biology, 1998

View PDFchevron_right

Cation-Specific Structural Accommodation within a Catalytic RNA

John Burke

Biochemistry, 2006

View PDFchevron_right

Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture

Pascale Legault

Nucleic Acids Research, 2012

View PDFchevron_right

NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit

Uma Nagaswamy

Nucleic Acids Research, 2005

View PDFchevron_right

Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA

Richard Collins III

Journal of Molecular Biology, 1998

View PDFchevron_right

Magnesium Dependence of the Amplified Conformational Switch in the Trans-Acting Hepatitis Delta Virus Ribozyme †

Rebecca Tinsley

Biochemistry, 2004

View PDFchevron_right

The global structure of the VS ribozyme

David Norman

The EMBO Journal, 2002

View PDFchevron_right

Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection

Wladek Minor

Nucleic acids research, 2015

View PDFchevron_right

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme

Timothy D Wilson

Proceedings of the National Academy of Sciences, 2010

View PDFchevron_right

The functional exchangeability of pk- and k-turns in RNA structure

Peter Daldrop

RNA Biology, 2013

View PDFchevron_right

A secondary-structure model for the self-cleaving region of Neurospora VS RNA

Richard Collins III

Proceedings of the National Academy of Sciences, 1995

View PDFchevron_right

An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs

Harald Schwalbe

Proceedings of the National Academy of Sciences, 2005

View PDFchevron_right

Structural Characterization of a Six-Nucleotide RNA Hairpin Loop Found in Escherichia coli , r(UUAAGU) † , ‡

Matthew Fountain

Biochemistry, 2001

View PDFchevron_right

Dynamics and Metal Ion Binding in the U6 RNA Intramolecular Stem–Loop as Analyzed by NMR

John Markley

Journal of Molecular Biology, 2005

View PDFchevron_right

A Thermodynamic Framework and Cooperativity in the Tertiary Folding of a Mg2+-Dependent Ribozyme

Tobin Sosnick

Biochemistry, 1999

View PDFchevron_right

Nature of the Chemical Bond Formed with the Structural Metal Ion at the A9/G10.1 Motif Derived from Hammerhead Ribozymes

Chojiro Kojima

Journal of the American Chemical Society, 2004

View PDFchevron_right

NMR spectroscopic characterization of a model RNA duplex reflecting the core sequence of hammerhead ribozymes

Chojiro Kojima

Nucleosides, Nucleotides & Nucleic Acids, 2018

View PDFchevron_right

Structural characterization of a ribonuclease III processing signal

allen nicholson

Nucleic Acids Research, 1994

View PDFchevron_right

Rearrangement of a Stable RNA Secondary Structure during VS Ribozyme Catalysis

Richard Collins III

Molecular Cell, 2000

View PDFchevron_right

Identification of functional domains in theself-cleaving Neurospora VS ribozyme using damage selection

Richard Collins III

Journal of Molecular Biology, 1997

View PDFchevron_right

Structural Variation Induced by Different Nucleotides at the Cleavage Site of the Hammerhead Ribozyme †

Nassim Usman

Biochemistry, 1998

View PDFchevron_right

RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I Ribozyme

Hüseyin Gökhan Çalışkan

Journal of Molecular Biology, 2005

View PDFchevron_right

Structure of the K-turn U4 RNA: a combined NMR and SANS study

T. Carlomagno

Nucleic Acids Research, 2010

View PDFchevron_right

Structure and semi-sequence-specific RNA binding of

Josef Pasulka

2013

View PDFchevron_right

Effect of magnesium ion on the structure of the 5S RNA from Escherichia coli. An imino proton magnetic resonance study of the helix I, IV, and V regions of the molecule

Neocles Leontis

Biochemistry, 1986

View PDFchevron_right

Crystal structure of the ribosomal RNA domain essential for binding elongation factors

Yuen-Ling Chan

Proceedings of the National Academy of Sciences, 1998

View PDFchevron_right

Structure–function relationships in RNA and RNP enzymes: Recent advances

Mina Sumita

Biopolymers, 2007

View PDFchevron_right

RNA Folding Causes Secondary Structure Rearrangement

Ming Lok Wu

Proceedings of The National Academy of Sciences, 1998

View PDFchevron_right

Structures of RNA Switches: Insight into Molecular Recognition and Tertiary Structure

Harald Schwalbe

Angewandte Chemie International Edition, 2007

View PDFchevron_right

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Wayne Dawson

RNA (New York, N.Y.), 2017

View PDFchevron_right