Controlled vocabularies and ontologies in proteomics: Overview, principles and practice (original) (raw)

Defining the Mandate of Proteomics in the Post-Genomics Era

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2002

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Progress in establishing common standards for exchanging proteomics data

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2003

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Making Sense of Next Big Things in Science: The Promise of Proteomics

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Top-down proteomics: Where we are, where we are going?

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Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative

Luisa Montecchi-Palazzi

2003

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A systematic approach to modeling, capturing, and disseminating proteomics experimental data

Tom Deery

Nature Biotechnology, 2003

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Proteomics: Technologies and Their Applications

Mohsin Khurshid

Journal of Chromatographic Science, 2016

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Proteomics and Beyond A Report on the 3rd Annual Spring Workshop of the HUPO‐PSI 21–23 April 2006, San Francisco, CA, USA

Dawn Field

…, 2006

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Past Conference Report: PROTEOMICS 2020

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American journal of physiology, biochemistry and pharmacology, 2020

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The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

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Database : the journal of biological databases and curation, 2013

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Where are we in the world of proteomics and bioinformatics?

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Expert Review of Proteomics, 2012

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Proteomics in Pathology

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Proteomics, 2018

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Gerhard Mayer

Nature Biotechnology, 2014

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The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments

Luisa Montecchi-Palazzi

2005

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Functional proteomics with biolinguistic methods

Gautam Singh

IEEE Engineering in Medicine and Biology Magazine, 2005

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Proteomics: Bases for protein complexity understanding

Michela Di Michele

Thrombosis Research, 2012

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Decoding Cancer Insights Recent Progress and Strategies in Proteomics for Biomarker Discovery (1)-

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PRODIS: a proteomics data management system with support to experiment tracking

Vinicius Alves

BMC Genomics, 2011

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Minireview: Applied Structural Bioinformatics in Proteomics

Yee Choong

The Protein Journal, 2013

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Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

Yasset Perez-Riverol

Proteomics, 2014

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The ProteoRed MIAPE web toolkit: A User-friendly Framework to Connect and Share Proteomics Standards

Alberto Paradela, Salvador Martínez-Bartolomé, J. Medina-aunon, Rosana Navajas

Molecular & Cellular Proteomics, 2011

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Use of protein ontology to enable data exchange for complex proteomic experiments

Amandeep Sidhu

21st IEEE International Symposium …, 2008

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A common open representation of mass spectrometry data and its application to proteomics research

Stephen Oliver

Nature Biotechnology, 2004

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The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Gerhard Mayer

Journal of proteome research, 2017

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