The Protein Structure Prediction Module of the Prot-Grid Information System (original) (raw)

Protein Structure Prediction

Apoorv Tiwari

Biophysical Journal, 2008

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Update on protein structure prediction: results of the 1995 IRBM workshop

Aron Marchler-bauer

1996

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Uncertainty analysis in protein disorder prediction

Mohamed Ghalwash

Molecular BioSystems, 2012

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The Protein Information Resource (PIR)

John S Garavelli

Nucleic Acids Research, 2000

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SCORE: predicting the core of protein models

Tom Blundell

Bioinformatics, 2001

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SCRATCH: a protein structure and structural feature prediction server

Pierre Baldi

Nucleic Acids Research, 2005

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Comparative Analysis of Different Evaluation Functions for Protein Structure Prediction Under the HP Model

Gregorio Pulido

Journal of Computer Science and Technology, 2013

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Running Title: Protein-Protein Interaction Sites Predicting Protein-Protein Interaction Sites From Amino Acid Sequence

Drena Dobbs

2003

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Protein secondary structure prediction using the three-dimensional profile method

Robert Harrison

Acta Crystallographica Section A Foundations of Crystallography, 1993

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Persistent diagrams for protein structure prediction

zakaria lamine, M. Mamouni

Research Square (Research Square), 2024

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Multiobjectivizing the HP Model for Protein Structure Prediction

Gregorio Pulido

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2012

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Structure and Function of Protein

Smita Mohanty

Biochemistry & physiology, 2013

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Protein Structure Prediction with Large Neighborhood Constraint Programming Search

P. Clote

Lecture Notes in Computer Science, 2008

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Comparing alternative energy functions for the HP model of protein structure prediction

Gregorio Pulido

2011 IEEE Congress of Evolutionary Computation (CEC), 2011

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CODA: A combined algorithm for predicting the structurally variable regions of protein models

Charlotte Deane

Protein Science, 2001

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In silico prediction of the structure of membrane proteins: Is it feasible?

rita casadio

2003

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Prediction of crystal packing and biological protein-protein interactions

Sridip Banerjee

2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2012

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PRTAD: A database for protein residue torsion angle distributions

Robert Jernigan

2007

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Predicting protein complexes by data integration of different types of interactions

Francesca Pio

International Journal of Computational Biology and Drug Design, 2010

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Minireview: Applied Structural Bioinformatics in Proteomics

Yee Choong

The Protein Journal, 2013

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Analysis of protein structure: a method of choice?

Jayati Mitra

Trends in Biochemical Sciences, 1986

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Human protein reference database—2006 update

Sapna Upendran

2006

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Prediction and experimental validation of enzyme substrate specificity in protein structures

MATTHEW WARD

Proceedings of the National Academy of Sciences, 2013

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Struct2Net: a web service to predict protein-protein interactions using a structure-based approach

Bonnie Berger

Nucleic Acids Research, 2010

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Online interactive analysis of protein structure ensembles with Bio3D-web

Aditya Wagh

Bioinformatics, 2016

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Protein Function Prediction Based on Protein-Protein Interactions: A Comparative Study

khaled sayed

IFMBE Proceedings, 2014

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Improving computational protein design by using structure‐derived sequence profile

Yaoqi Zhou

2010

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Protein Three-Dimensional Structural Databases: Domains, Structurally Aligned Homologues and Superfamilies

Tom Blundell

Acta Crystallographica Section D-biological Crystallography, 1998

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NGPINT: A Next-generation protein-protein interaction software

Roger Wise

2020

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Impact of residue accessible surface area on the prediction of protein secondary structures

Sayed-Amir Marashi

BMC Bioinformatics, 2008

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On the Encoding of Proteins for Disordered Regions Prediction

Louis Wehenkel

PLOS ONE, 2013

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Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions

Yosuke Ozawa

2010

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Protein Engineering Methods and Applications

Ceren ALKIM

InTech eBooks, 2012

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Proteomics: Bases for protein complexity understanding

Michela Di Michele

Thrombosis Research, 2012

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Predicting Secondary Structure for Human Proteins Based on Chou-Fasman Method

Gerasimos Vonitsanos

IFIP Advances in Information and Communication Technology, 2019

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