Small Proteins Fold Through Transition States With Native-like Topologies (original) (raw)
Quantifying the Structural Requirements of the Folding Transition State of Protein A and Other Systems
Michael Baxa
Journal of Molecular Biology, 2008
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ψ-Constrained Simulations of Protein Folding Transition States: Implications for Calculating ϕ
Michael Baxa
Journal of Molecular Biology, 2009
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Statistical analysis of native contact formation in the folding of designed model proteins
Guido Tiana
The Journal of Chemical Physics, 2001
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Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains
Adam Liwo
Proceedings of The National Academy of Sciences, 2005
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Atomistic description of the folding of a dimeric protein
Stefano Piana
2013
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Metal Binding Kinetics of Bi-Histidine Sites Used in ψ Analysis: Evidence of High-Energy Protein Folding Intermediates †
Tobin Sosnick
Biochemistry, 2009
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The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding
Daniel Otzen
Journal of Molecular Biology, 1995
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Structure of the Transition State for Folding of a Protein Derived from Experiment and Simulation
Daniel Otzen
Journal of Molecular Biology, 1996
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Atomic-detailed milestones along the folding trajectory of protein G
Guido Tiana
2009
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Molecular dynamics simulations of protein folding from the transition state
Amedeo Caflisch
Proceedings of the National Academy of Sciences, 2002
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Identifying the protein folding nucleus using molecular dynamics 1 1 Edited by A. R. Fersht
Nikolay Dokholyan
Journal of Molecular Biology, 2000
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Equilibrium folding pathways for model proteins
Robert Jernigan
Journal of Statistical Physics, 1983
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Determination of the Transition State Ensemble for the Folding of Ubiquitin from a Combination of Φ and Ψ Analyses
Peter Varnai
Journal of Molecular Biology, 2008
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Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' -values
Xavier Salvatella
Protein Engineering Design and Selection, 2008
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Correlation between rate of folding, energy landscape, and topology in the folding of a model protein HP-36
Arnab Mukherjee
The Journal of Chemical Physics, 2003
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Protein folding pathways and kinetics: molecular dynamics simulations of beta-strand motifs
Yaoqi Zhou
Biophysical journal, 2002
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Time‐resolved backbone desolvation and mutational hot spots in folding proteins
Ariel Fernandez
Proteins-structure Function and Bioinformatics, 2002
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Hydration of the Folding Transition State Ensemble of a Protein
Priya Velu
Biochemistry, 2006
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Structural Basis of Folding Cooperativity in Model Proteins: Insights from a Microcanonical Perspective
Tristan Bereau
Biophysical Journal, 2011
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Protein folding and the organization of the protein topology universe
Peter Røgen
Trends in Biochemical Sciences, 2005
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Characterizing the Protein Folding Transition State Using ψ Analysis
Tobin Sosnick
Chemical Reviews, 2006
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Local Interactions Dominate Folding in a Simple Protein Model
Ron Unger
Journal of Molecular Biology, 1996
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Relationships between unfolded configurations of proteins and dynamics of folding to the native state
Attila Gursoy, Metin Türkay
Journal of Polymer Science Part B: Polymer Physics, 2006
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A Hamiltonian Replica Exchange Molecular Dynamics (MD) Method for the Study of Folding, Based on the Analysis of the Stabilization Determinants of Proteins
Massimiliano Meli
International Journal of Molecular Sciences, 2013
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Comparison of Successive Transition States for Folding Reveals Alternative Early Folding Pathways of Two Homologous Proteins
Lars Eklund
Proceedings of the …, 2008
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Protein folding: search for basic physical models
Robert Harrison
2003
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Molecular Dynamics Simulations of Protein Folding
Angel Garcia
Protein Structure Prediction, 2008
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From Coarse-Grained to Atomic-Level Characterization of Protein Dynamics: Transition State for the Folding of B Domain of Protein A
Sebastian Kmiecik
The Journal of Physical Chemistry B, 2012
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Folding of proteins with an all-atom Gō-model
Feng Liu
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Self-organization and mismatch tolerance in protein folding: General theory and an application
Ariel Fernandez
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