Genetic algorithms, operators, and DNA fragment assembly (original) (raw)

Genetic algorithms for DNA sequence assembly

R. Parsons

Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, 1993

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Seeding strategies and recombination operators for solving the DNA fragment assembly problem

Gabriela Minetti

Information Processing Letters, 2008

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Recentering and Restarting Genetic Algorithm variations for DNA Fragment Assembly

Guillermo M. Mallén Fullerton

2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

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Experimental Evaluation of Genetic Algorithms to Solve the DNA Assembly Optimization Problem

Hachemi Bennaceur

International Journal of Advanced Computer Science and Applications, 2023

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A Study of DNA Fragment Assembly Algorithms

Satyanarayana Reddy

Journal of Applied Physics and Engineering, 2016

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An Investigative Study of Genetic Algorithms to Solve the DNA Assembly Optimization Problem

Hachemi Bennaceur

International Journal of Advanced Computer Science and Applications

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Combinatorial algorithms for DNA sequence assembly

mahmoud ismail

Algorithmica, 1995

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An integer programming approach to DNA sequence assembly

YoungJung Chang, Nikolaos Sahinidis

Computational Biology and Chemistry, 2011

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Variable Neighborhood Search as Genetic Algorithm Operator for DNA Fragment Assembling Problem

Gabriela Minetti

2008 Eighth International Conference on Hybrid Intelligent Systems, 2008

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Assembling DNA Fragments with a Distributed Genetic Algorithm

Sami Khuri

2005

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DNA fragment assembly using a grid-based genetic algorithm

Francisco Parra Luna

Computers & Operations Research, 2008

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A comparison of DNA fragment assembly algorithms

Sami Khuri

… on mathematics and engineering techniques in …, 2004

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Assembling sequences of {DNA} using an on-line algorithm based on DeBruijn graphs

Mauricio Toro

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An Efficient-Assembler Whale Optimization Algorithm for DNA Fragment Assembly Problem: Analysis and Validations

reda mohamed

IEEE Access, 2020

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A comparison of genetic sequencing operators

Susan McDaniel

1991

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Gene Reordering and Concurrency in Genetic Algorithms

Gokturk Ucoluk

2002

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Ordering genetic algorithm genomes with reconstructability analysis

Martin Zwick

International Journal of General Systems, 2003

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Dna Sequence Assembly Involving an Acyclic Graph Model

Jacek Blazewicz

Foundations of Computing and Decision Sciences, 2013

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DNA fragment assembly using optimization

Guillermo Fernandez-anaya

2013 IEEE Congress on Evolutionary Computation, 2013

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Parallel DNA sequence assembly

Jacek Blazewicz

Proceedings of the Fifth Mexican International Conference in Computer Science, 2004. ENC 2004.

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Binary vs Symbolic Chromosomal Encoding in GA-based Selection of Optimal Assembly Sequences

Carmelo del Valle

1999

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Transposition: A Biologically Inspired Mechanism to Use with Genetic Algorithms

Ernesto COSTA

1999

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Transposition: A Biological-Inspired Mechanism to Use with Genetic Algorithms

Anabela Simões

Artificial Neural Nets and Genetic Algorithms, 1999

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Constraint Database Solutions to the Genome Map Assembly Problem

Peter Revesz

First International Symposium on Constraint Databases, Springer LNCS, 2004

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Improving Initial Pool Generation of Direct-Proportional Length-Based DNA Computing by Parallel Overlap Assembly

Zuwairie Ibrahim

Advances in Soft Computing, 2005

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Review of General Algorithmic Features for Genome Assemblers for Next Generation Sequencers

Erchin Serpedin

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Improving DNA Computing Using Evolutionary Techniques

Tarik A Rashid

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An extended library of hardware modules for genetic algorithms, with applications to DNA sequence matching

carla purdy

2008 51st Midwest Symposium on Circuits and Systems, 2008

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Building approximate overlap graphs for DNA assembly using random-permutations-based search

Roy R Lederman

2012

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Rearrangement of DNA fragments: a branch-and-cut algorithm

Yoshiko Wakabayashi

2002

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A self-adaptive cellular memetic algorithm for the DNA fragment assembly problem

Pascal Bouvry

2008

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Search Strategies for DNA Sequence Design Software

Udo Feldkamp

2010

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Sequencing by hybridization: an enhanced crossover operator for a hybrid genetic algorithm

Andrei Tchernykh

Journal of Heuristics, 2007

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