Down-regulation of p-coumaroyl quinate/shikimate 3'-hydroxylase (C3'H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release (original) (raw)
Related papers
BioEnergy Research, 2016
Lignin reduction through breeding and genetic modification has the potential to reduce costs in biomass processing in pulp and paper, forage, and lignocellulosic ethanol industries. Here, we present detailed characterization of the extractability and lignin structure of Eucalyptus urophylla ×-Eucalyptus grandis RNAi downregulated in p-coumaroyl quinate/shikimate 3′-hydroxylase (C3′H) or cinnamate-4hydroxylase (C4H). Both the C3′H and C4H downregulated lines were found to have significantly higher extractability when exposed to NaOH base extraction, indicating altered cell wall construction. The molecular weight of isolated lignin was measured and lignin structure was determined by HSQC NMR-based lignin subunit analysis for control and the C3′H and C4H downregulated lines. The slight reductions in average molecular weights of the lignin isolated from the transgenic lines (C3′H = 7000, C4H = 6500, control = 7300) does not appear to explain the difference in extractability. The HSQC NMR-based lignin subunit analysis showed increases in H lignin content for the C3′H but only slight differences in the lignin subunit structure of the C3′H and C4H downregulated lines when compared to the control. The greatest difference between the C3′H and C4H downregulated lines is the total lignin content; therefore, it appears that overall lowered lignin content contributes greatly to reduced recalcitrance and increased extractability of cell wall biopolymers. Further studies will be conducted to determine how the reduction in lignin content creates a less rigid cell wall that is more prone to extraction and sugar release.
Plant Journal, 2005
EgMYB2, a member of a new subgroup of the R2R3 MYB family of transcription factors, was cloned from a library consisting of RNA from differentiating Eucalyptus xylem. EgMYB2 maps to a unique locus on the Eucalyptus grandis linkage map and co-localizes with a quantitative trait locus (QTL) for lignin content. Recombinant EgMYB2 protein was able to bind specifically the cis-regulatory regions of the promoters of two lignin biosynthetic genes, cinnamoyl-coenzyme A reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD), which contain MYB consensus binding sites. EgMYB2 was also able to regulate their transcription in both transient and stable expression assays. Transgenic tobacco plants over-expressing EgMYB2 displayed phenotypic changes relative to wild-type plants, among which were a dramatic increase in secondary cell wall thickness, and an alteration of the lignin profiles. Transcript abundance of genes encoding enzymes specific to lignin biosynthesis was increased to varying extents according to the position of individual genes in the pathway, whereas core phenylpropanoid genes were not significantly affected. Together these results suggest a role for EgMYB2 in the co-ordinated control of genes belonging to the monolignol-specific pathway, and therefore in the biosynthesis of lignin and the regulation of secondary cell wall formation.
The Plant Journal, 2005
EgMYB2, a member of a new subgroup of the R2R3 MYB family of transcription factors, was cloned from a library consisting of RNA from differentiating Eucalyptus xylem. EgMYB2 maps to a unique locus on the Eucalyptus grandis linkage map and co-localizes with a quantitative trait locus (QTL) for lignin content. Recombinant EgMYB2 protein was able to bind specifically the cis-regulatory regions of the promoters of two lignin biosynthetic genes, cinnamoyl-coenzyme A reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD), which contain MYB consensus binding sites. EgMYB2 was also able to regulate their transcription in both transient and stable expression assays. Transgenic tobacco plants over-expressing EgMYB2 displayed phenotypic changes relative to wild-type plants, among which were a dramatic increase in secondary cell wall thickness, and an alteration of the lignin profiles. Transcript abundance of genes encoding enzymes specific to lignin biosynthesis was increased to varying extents according to the position of individual genes in the pathway, whereas core phenylpropanoid genes were not significantly affected. Together these results suggest a role for EgMYB2 in the co-ordinated control of genes belonging to the monolignol-specific pathway, and therefore in the biosynthesis of lignin and the regulation of secondary cell wall formation.
Molecular Breeding, 2003
A procedure for A. tumefaciens-mediated genetic transformation of a juvenile E. camaldulensis clone is presented. CAD antisense full-length cDNAs from Eucalyptus gunnii or Nicotiana tabacum was introduced under the control of the CaMV 35S DE promoter. From 44 individual transgenic shoots selected by PCR analysis, 32% exhibited a significant reduction of CAD activity, up to 83%. The use of the heterologous tobacco CAD cDNA construct was less efficient (up to 65% reduction). Transcript levels in 3 lines obtained using the homologous eucalyptus cDNA confirmed the under-expression of the CAD gene, and Southern blot data indicated a low transgene copy number ranging between 1 and 3. The most down-regulated plant contained a single transgene copy. Therefore, for the first time in eucalyptus, genetically modified plantlets exhibiting a strong inhibition of CAD activity associated with decreased transcription were recovered. Five transgenic lines, transferred to the greenhouse for 10 months, went through a wood chemical analysis that showed no differences in lignin quantity (through Fourier transform infrared spectroscopy), composition (through analytical pyrolysis) or pulp yield (through Kraft pulping) compared to control trees. Despite the down-regulation of the CAD gene in this Eucalyptus species of economic interest, the lack of significant changes in lignin profiles indicates that probably the trees were not sufficiently suppressed in CAD throughout development to exhibit obvious modifications in lignin and pulping. This raises the problem of the requirements for an efficient modulation of lignification in trees such as eucalyptus.
Trees, 2012
Genes of cellulose and lignin synthesis are important for tree breeding because their activity greatly affects wood properties as well as general growth. The expression (transcript abundance) of genes of cellulose and lignin synthesis in tangential xylem scrapes at breast height sampled at the end of June (middle of active growing season) was related to wood properties in five fast-growing and six slow-growing families of Eucalyptus urophylla from a combined progeny test and seedling seed orchard grown for 10 years in northern Vietnam. Cellulose synthase A (CesA) genes encoding proteins active in the primary cell wall, EuCesA4 and EuCesA5, were more highly expressed than EuCesA1, EuCesA2 and EuCesA3, encoding genes active in the secondary cell wall. EuCesA4 expression was correlated with that of EuCesA5 (r = 0.49, P = 0.040) and EuCesA5 with EuCesA6 (r = 0.46, P = 0.040). EuCesA4 expression was significantly higher in the fast-growing group and was correlated with cellulose content (r = 0.51, P = 0.011). Over 2 kb of the EuCesA gene was sequenced in 24 trees extending from the 5 0 untranslated region through six exons and six introns and revealed 83 polymorphisms and rapid decay of linkage disequilibrium over 500 bp. EuCesA4 activity in xylem is involved in the genetic control of cellulose content, and the gene may have potential for marker-aided selection.
Background Lignin and xylan are important determinants of a cell wall structure and lignocellulosic biomass digestibility. Genetic manipulations that individually modify either lignin or xylan structure improve polysaccharide digestibility. However, the effects of their simultaneous modifications have not been explored in a similar context. Here, we generated combinatorial cell wall mutants and studied the consequences on plant cell wall properties, biotic stress responses and plant cell wall integrity. Results Arabidopsis plant co-harbouring mutation in ferulate 5-hydroxylase (fah1-2) and overexpressing Aspergillus niger acetyl xylan esterase (35S:AnAXE1) transgenic were generated and displayed normal growth attributes with intact xylem architecture. This fah1-2/35S:AnAXE1 crossed named as hyper G lignin and hypoacetylated (HrGHypAc) line. The HrGHypAc plants showed increased crystalline cellulose content with enhanced digestibility after chemical and enzymatic pre-treatment. Moreo...
Genome-wide analysis of the lignin toolbox of Eucalyptus grandis
New Phytologist, 2015
Lignin, a major component of secondary cell walls, hinders the optimal processing of wood for industrial uses. The recent availability of the Eucalyptus grandis genome sequence allows comprehensive analysis of the genes encoding the 11 protein families specific to the lignin branch of the phenylpropanoid pathway and identification of those mainly involved in xylem developmental lignification.
Tree Genetics & Genomes, 2011
One hundred genotypes of Eucalyptus globulus were ranked according to specific consumption of wood (cubic meters of wood needed to produce 1 ton of pulp). Ten of the most contrasting genotypes were separated in two groups of five clones each; group 1 (G1) with high wood density, high pulp yield, and low specific consumption, and group 2 (G2) with low density, low pulp yield, and high specific consumption. The contrasting genotypes also had significant differences in lignin content, percent syringyl unit composition, and frequency of β-O-4 linkages. Gene expression for phenylalanine ammonia-lyase (PAL), cinnamyl alcohol dehydrogenase (CAD), 4coumarate:CoA ligase (4CL) and ferulate 5-hydrolase (F5H) was analyzed in the contrasting genotypes. In both groups, transcript abundance for CAD, PAL, and 4CL were similar and only F5H presented significant differences between groups, with high values in the best ranked genotypes G1 in comparison to G2. Correlations between traits were estimated for lignin content vs. pulp yield (R 2 =0.97), pulp yield vs. syringyl units (R 2 =0.82), β-O-4 linkages vs. pulp yield (R 2 =0.84), and β-O-4 linkages vs. syringyl units (R 2 =0.97). Correlations between chemical composition and transcript abundance for F5H were calculated, finding correlation values with lignin content (R 2 =0.81), syringyl units (R 2 =0.83), and pulp yield (R 2 =0.81). The measurement of transcript abundance of F5H represents a potential genomic tool for tree improvement programs to select trees with high pulp yield.
The Plant Journal, 2017
Lignin engineering is a promising tool to reduce the energy input and the need of chemical pre-treatments for the efficient conversion of plant biomass into fermentable sugars for downstream applications. At the same time, lignin engineering can offer new insight into the structure-function relationships of plant cell walls by combined mechanical, structural and chemical analyses. Here, this comprehensive approach was applied to poplar trees (Populus tremula 3 Populus alba) downregulated for CINNAMYL ALCOHOL DEHY-DROGENASE (CAD) in order to gain insight into the impact of lignin reduction on mechanical properties. The downregulation of CAD resulted in a significant decrease in both elastic modulus and yield stress. As wood density and cellulose microfibril angle (MFA) did not show any significant differences between the wild type and the transgenic lines, these structural features could be excluded as influencing factors. Fourier transform infrared spectroscopy (FTIR) and Raman imaging were performed to elucidate changes in the chemical composition directly on the mechanically tested tissue sections. Lignin content was identified as a mechanically relevant factor, as a correlation with a coefficient of determination (r²) of 0.65 between lignin absorbance (as an indicator of lignin content) and tensile stiffness was found. A comparison of the present results with those of previous investigations shows that the mechanical impact of lignin alteration under tensile stress depends on certain structural conditions, such as a high cellulose MFA, which emphasizes the complex relationship between the chemistry and mechanical properties in plant cell walls.