RNA structure alignment by a unit-vector approach (original) (raw)
Related papers
SCOR: a Structural Classification of RNA database
Nucleic Acids Research, 2002
CompPSA: A Component-Based Pairwise RNA Secondary Structure Alignment Algorithm
World Academy of Science, Engineering and Technology, International Journal of Bioengineering and Life Sciences, 2017
ARTS: alignment of RNA tertiary structures
Bioinformatics, 2005
Fast alignment and comparison of RNA structures
Bioinformatics, 2013
A method for aligning RNA secondary structures and its application to RNA motif detection
BMC bioinformatics, 2005
SCOR: Structural Classification of RNA, version 2.0
Nucleic Acids Research, 2004
RNA-align: quick and accurate alignment of RNA 3D structures based on size-independent TM-scoreRNA
Bioinformatics, 2019
Efficient RNA pairwise structure comparison by SETTER method
Bioinformatics, 2012
RNAlign2D – a novel RNA structural alignment tool based on pseudo-amino acid substitution matrix
2020
A benchmark of multiple sequence alignment programs upon structural RNAs
Nucleic Acids Research, 2005
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
Lecture Notes in Computer Science, 2005
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments
2006
A novel approach to represent and compare RNA secondary structures
Nucleic Acids Research, 2014
BEAM: a new method for RNA secondary structure motif discovery
F1000posters, 2014
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2000
Automated identification of RNA 3D modules with discriminative power in RNA structural alignments
Nucleic Acids Research, 2013
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
BMC Bioinformatics, 2006
RNAalifold: improved consensus structure prediction for RNA alignments
Ivo L Hofacker, Stephan Bernhart
BMC Bioinformatics, 2008
2018
Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
BMC Bioinformatics, 2007
PMFastR:A New Algorithm to Multiple RNA Structure Alignment
Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix
PLoS Computational Biology, 2007
RNA, 2012
2008
Web-Beagle: a web server for the alignment of RNA secondary structures
Fabrizio Ferre, F. Ferrè, Eugenio Mattei, Marco Pietrosanto
Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures
Genes
RNA structure: bioinformatic analysis
Current Opinion in Microbiology, 2007
BMC bioinformatics, 2007
RNAComp: A new method for RNA secondary structure alignment
2009
RNAMAT: an efficient method to detect classes of RNA molecules and their structural features
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2004
Supplementary material: A benchmark of multiple se-quence alignment programs upon structural RNAs
R-PASS: A Fast Structure-Based RNA Sequence Alignment Algorithm
2011 IEEE International Conference on Bioinformatics and Biomedicine, 2011
Detecting conserved secondary structures in RNA molecules using constrained structural alignment
Computational Biology and Chemistry, 2008
Displaying the information contents of structural RNA alignments
1997