Asaia lannaensis sp. nov., a New Acetic Acid Bacterium in the Alphaproteobacteria (original) (raw)
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Asaia siamensis sp. nov., an acetic acid bacterium in the alpha-proteobacteria
International Journal of Systematic and Evolutionary Microbiology, 2001
Five bacterial strains were isolated from tropical flowers collected in Thailand and Indonesia by the enrichment culture approach for acetic acid bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolates were located within the cluster of the genus Asaia. The isolates constituted a group separate from Asaia bogorensis on the basis of DNA relatedness values. Their DNA GMC contents were 586-597 mol %, with a range of 11 mol %, which were slightly lower than that of A. bogorensis (593-610 mol %), the type species of the genus Asaia. The isolates had morphological, physiological and biochemical characteristics similar to A. bogorensis strains, but the isolates did not produce acid from dulcitol. On the basis of the results obtained, the name Asaia siamensis sp. nov. is proposed for these isolates. Strain S60-1 T , isolated from a flower of crown flower (dok rak, Calotropis gigantea) collected in Bangkok, Thailand, was designated the type strain (l NRIC 0323 T l JCM 10715 T l IFO 16457 T).
Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the alpha-Proteobacteria
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000
Eight Gram-negative, aerobic, rod-shaped and peritrichously flagellated strains were isolated from flowers of the orchid tree (Bauhinia purpurea) and of plumbago (Plumbago auriculata), and from fermented glutinous rice, all collected in Indonesia. The enrichment culture approach for acetic acid bacteria was employed, involving use of sorbitol medium at pH 3.5. All isolates grew well at pH 3.0 and 30 degrees C. They did not oxidize ethanol to acetic acid except for one strain that oxidized ethanol weakly, and 0.35% acetic acid inhibited their growth completely. However, they oxidized acetate and lactate to carbon dioxide and water. The isolates grew well on mannitol agar and on glutamate agar, and assimilated ammonium sulfate for growth on vitamin-free glucose medium. The isolates produced acid from D-glucose, D-fructose, L-sorbose, dulcitol and glycerol. The quinone system was Q-10. DNA base composition ranged from 59.3 to 61.0 mol% G + C. Studies of DNA relatedness showed that the isolates constitute a single species. Phylogenetic analysis based on their 16S rRNA gene sequences indicated that the isolates are located in the acetic acid bacteria lineage, but distant from the genera Acetobacter, Gluconobacter, Acidomonas and Gluconacetobacter. On the basis of the above characteristics, the name Asaia bogorensis gen. nov., sp. nov. is proposed for these isolates. The type strain is isolate 71T (= NRIC 0311T = JCM 10569T).
Asaia krungthepensis sp. nov., an acetic acid bacterium in the -Proteobacteria
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004
Three bacterial strains were isolated from flowers collected in Bangkok, Thailand, by an enrichment-culture approach for acetic acid bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolates were located in the lineage of the genus Asaia but constituted a cluster separate from the type strains of Asaia bogorensis and Asaia siamensis. The DNA base composition of the isolates was 60?2-60?5 mol% G+C, with a range of 0?3 mol%. The isolates constituted a taxon separate from Asaia bogorensis and Asaia siamensis on the basis of DNA-DNA relatedness. The isolates had morphological, physiological, biochemical and chemotaxonomic characteristics similar to those of the type strains of Asaia bogorensis and Asaia siamensis, but the isolates grew on maltose. The major ubiquinone was Q 10 . On the basis of the results obtained, the name Asaia krungthepensis sp. nov. is proposed for the isolates. The type strain is isolate AA08 T (=BCC 12978 T =TISTR 1524 T =NBRC 100057 T =NRIC 0535 T ), which had a DNA G+C content of 60?3 mol% and was isolated from a heliconia flower ('paksaasawan' in Thai; Heliconia sp.) collected in Bangkok, Thailand.
Annals of Microbiology, 2019
Purpose Two bacterial strains, designated as isolates VTH-Ai14 T and VTH-Ai15, that have plant growth-promoting ability were isolated during the study on acetic acid bacteria diversity in Vietnam. The phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were located closely to Acetobacter nitrogenifigens RG1 T but formed an independent cluster. Methods The phylogenetic analysis based on 16S rRNA gene and three housekeeping genes' (dnaK, groEL, and rpoB) sequences were analyzed. The genomic DNA of the two isolates, VTH-Ai14 T and VTH-Ai15, Acetobacter nitrogenifigens RG1 T , the closest phylogenetic species, and Acetobacter aceti NBRC 14818 T were hybridized and calculated the %similarity. Then, phenotypic and chemotaxonomic characteristics were determined for species' description using the conventional method. Results The 16S rRNA gene and concatenated of the three housekeeping genes phylogenetic analysis suggests that the two isolates were constituted in a species separated from Acetobacter nitrogenifigens, Acetobacter aceti, and Acetobacter sicerae. The two isolates VTH-Ai14 T and VTH-Ai15 showed 99.65% and 98.65% similarity of 16S rRNA gene when compared with Acetobacter nitrogenifigens and Acetobacter aceti and they were so different from Acetobacter nitrogenifigens RG1 T with 56.99 ± 3.6 and 68.15 ± 1.8% in DNA-DNA hybridization, when isolates VTH-Ai14 T and VTH-Ai15 were respectively labeled. Moreover, the two isolates were phenotypically distinguished from Acetobacter nitrogenifigens in growth in the presence of 0.35% acetic acid (v/v), on nitrogen-free LGI medium and D-mannitol, and in no ability to solubilize phosphate. Conclusion Therefore, the two isolates, VTH-Ai14 T (= VTCC 910031 T = BCC 67843 T = TBRC 11175 T = NRIC 0977 T) and VTH-Ai15 (= VTCC 910032 = BCC 67844 = TBRC 11176 = NRIC 0978), can be assigned to an independent species within the genus Acetobacter, and the name of Acetobacter sacchari sp. nov. is proposed for the two isolates.
16S rRNA gene sequences analysis of acetic acid bacteria isolated from Thailand
We determined the 16S rRNA gene sequences of 302 strains of acetic acid bacteria isolated from Thailand. The isolates were divided into 35 sequence groups based on differences in 16S rRNA gene sequences. A phylogenetic tree constructed from these sequences showed that 5 strains should be classified into new genera in the family Acetobacteraceae. The other 297 strains were assigned to 33 sequence groups of 4 known genera Acetobacter, Asaia, Gluconacetobacter, and Gluconobacter. Seventeen strains belonging to Acetobacter were divided into 8 sequence groups (AB1-AB8). Seven groups except for AB2 were closely related to known Acetobacter species. AB2 was remote from known Acetobacter species. We sorted 150 strains of Asaia into 11 sequence groups (AS1-AS11). AS11 was distinct from all known Asaia species. Nine strains assigned to Gluconacetobacter showed 100% sequence similarity to Gluconacetobacter liquefaciens NBRC 12388T. Further, 121 strains of Gluconobacter were divided into 13 sequence groups (GB1-GB13). Of these, GB1 and GB6 seemed to constitute 2 distinct lineages in the genus. Based on these results, 155 Thai strains were deposited from the BIOTEC culture collection (BCC) in the NITE Biological Resource Center (NBRC) for public use.
Kozakia baliensis gen. nov., sp. nov., a novel acetic acid bacterium in the a-Proteobacteria
2000
ABSTRACT Four bacterial strains were isolated from palm brown sugar and ragi collected in Bali and Yogyakarta, Indonesia, by an enrichment culture approach for acetic acid bacteria. Phylogenetic analysis based on 16S rRNA gene sequences showed that the four isolates constituted a cluster separate from the genera Acetobacter, Gluconobacter, Acidomonas, Gluconacetobacter and Asaia with a high bootstrap value in a phylogenetic tree. The isolates had high values of DNA-DNA similarity (78-100%) between one another and low values of the similarity (7-25%) to the type strains of Acetobacter aceti, Gluconobacter oxydans, Gluconacetobacter liquefaciens and Asaia bogorensis. The DNA base composition of the isolates ranged from 56.8 to 57.2 mol% G+C with a range of 0-4 mol%. The major quinone was Q-10. The isolates oxidized acetate and lactate to carbon dioxide and water, but the activity was weak, as with strains of Asaia bogorensis. The isolates differed from Asaia bogorensis strains in phenotypic characteristics. The name Kozakia baliensis gen. nov., sp. nov., is proposed for the four isolates. Strain Yo-3T (= NRIC 0488T = JCM 11301T = IFO 16664T = DSM 14400T) was isolated from palm brown sugar collected in Bali, Indonesia, and was designated as the type strain.
Journal of General and Applied Microbiology, 2005
An acetic acid bacterium, designated as isolate AC28 T , was isolated from a flower of red ginger (khing daeng in Thai; Alpinia purpurata) collected in Chiang Mai, Thailand, at pH 3.5 by use of a glucose/ethanol/acetic acid (0.3%, w/v) medium. A phylogenetic tree based on 16S rRNA gene sequences for 1,376 bases showed that isolate AC28 T constituted a cluster along with the type strain of Kozakia baliensis. However, the isolate formed an independent cluster in a phylogenetic tree based on 16S-23S rDNA internal transcribed spacer (ITS) region sequences for 586 bases. Pair-wise sequence similarities of the isolate in 16S rRNA gene sequences for 1,457 bases were 93.0-88.3% to the type strains of Asaia, Kozakia, Swaminathania, Acetobacter, Gluconobacter, Gluconacetobacter, Acidomonas, and Saccharibacter species. Restriction analysis of 16S-23S rDNA ITS regions discriminated isolate AC28 T from the type strains of Asaia and Kozakia species. Cells were non-motile. Colonies were pink, shiny, and smooth. The isolate produced acetic acid from ethanol. Oxidation of acetate and lactate was negative. The isolate grew on glutamate agar and mannitol agar. Growth was positive on 30% D-glucose (w/v) and in the presence of 0.35% acetic acid (w/v), but not in the presence of 1.0% KNO 3 (w/v). Ammoniac nitrogen was hardly assimilated on a glucose medium or a mannitol medium. Production of dihydroxyacetone from glycerol was weakly positive. The isolate did not produce a levan-like polysaccharide on a sucrose medium. Major isoprenoid quinone was Q-10. DNA base composition was 63.1 mol% G؉C. On the basis of the results obtained, Neoasaia gen. nov. was proposed with Neoasaia chiangmaiensis sp. nov. The type strain was isolate AC28 T (؍BCC 15763 T ؍NBRC 101099 T ).
Acetobacter thailandicus sp. nov., for a strain isolated in Thailand
Annals of Microbiology, 2015
A Gram-negative, rod-shaped, and non-motile bacterium, designated as isolate AD25 T , was isolated from a flower of the blue trumpet vine (Thunbergia laurifolia) at Tong Pha Phum, Kanchanaburi, Thailand. Phylogenetic analyses of 16S rRNA gene, 16S-23S rRNA gene internal transcribed spacer (ITS) region, and groEL gene sequences showed that the isolate was quite remote and constituted a cluster independent from the type strains of other Acetobacter species. The isolate was closely related to Acetobacter cibinongensis, one of the closest relatives, with 98.3 % 16S rRNA gene sequence similarity. The DNA G-+-C content of the isolate was 51.4 mol%. The isolate grew intensely on 10 % ethanol with 1.5 % D-glucose in the presence of 0.3 % peptone and 0.3 % yeast extract, and grew weakly on 3.0 % D-glucose in the presence of 0.1 % ammonium sulfate as the sole source of nitrogen. The isolate produced only D-gluconic acid from D-glucose. Based on physiological, biochemical, and genotypic differences between the isolate and the type strains of the validly named species, it is proposed that the isolate be classified as a novel species of Acetobacter, for which the name Acetobacter thailandicus sp. nov. is introduced. The type strain is isolate AD25 T (= BCC 15839 T = NBRC 103583 T). Keywords Acetic acid bacterium. Acetobacter thailandicus sp. nov. groEL gene sequences. 16S rRNA gene sequences. 16S-23S rRNA gene ITS sequences Electronic supplementary material The online version of this article
Acetobacter suratthanensis sp. nov., an acetic acid bacterium isolated in Thailand
Annals of Microbiology, 2016
A Gram-negative, rod-shaped, and non-motile bacterium, designated as AI32 T , was isolated from a fruit in Surat Thani, the southern district of Thailand. Phylogenetic analyses of the 16S rRNA gene, 16S-23S rRNA gene ITS, and groEL gene sequences showed that the isolate formed a quite independent cluster located outside the clusters of Acetobacter peroxydans and Acetobacter papayae. Analysis of 16S rRNA gene sequence showed that the isolate was related to the type strains of A. peroxydans and A. papayae, respectively, with 99.4 % and 99.3 % similarities. The DNA G + C content of the isolate was 59.6 mol%. The isolate was positive in catalase test and showed no growth on ethanol in the presence of ammonium sulfate. The isolate produced only D-gluconic acid from D-glucose. The predominant fatty acid of isolate AI32 T was C 18:1 ω7C. Based on the results obtained in physiological and biochemical tests and in genotypic differences between the isolate and the type strains of the validly named species of the genus Acetobacter, the isolate is classified as a novel species, for which the name of Acetobacter suratthanensis sp. nov. is introduced. The type strain of the species is AI32 T (= BCC 26087 T = NBRC 111399 T). Keywords Acetic acid bacterium. Acetobacter suratthanensis sp. nov.. groEL gene sequences. 16S rRNA gene sequences. 16S-23S rRNA gene ITS sequences