A probabilistic measure for alignment-free sequence comparison (original) (raw)
Related papers
Similarity evaluation of DNA sequences based on nucleotides similarity
Proceedings of the 3rd International Conference on Information and Communication Systems - ICICS 12, 2012
A Deterministic Algorithm for DNA Sequence Comparison
Distance measures for biological sequences: Some recent approaches
Antonio Restivo, Marinella Sciortino
International Journal of Approximate Reasoning, 2008
A Substitution and Alignment Free Similarity Measure for Protein Sequences
Estimating Similarities in DNA Strings Using the Efficacious Rank Distance Approach
Systems and Computational Biology - Bioinformatics and Computational Modeling, 2011
Similarity analysis for DNA sequences based on chaos game representation Case study The albumin
2010
Testing statistical significance scores of sequence comparison methods using structure similarity
A survey of multiple sequence comparison methods
Bulletin of Mathematical Biology, 1992
An improved algorithm for matching biological sequences
Journal of Molecular Biology, 1982
Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics
Journal of Computational Biology, 2010
Testing statistical significance scores of sequence comparison methods with structure similarity
BMC bioinformatics, 2006
Mathematical Approach to Protein Sequence Comparison Based on Physiochemical Properties
ACS Omega
Empirical statistical estimates for sequence similarity searches 1 1 Edited by F. E. Cohen
J Mol Biol, 1998
Analysis of genomic sequences by Chaos Game Representation
…, 2001
On efficiency of sequence alignment algorithms
2009
Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis
Briefings in Bioinformatics, 2013
[27] Dynamic programming algorithms for biological sequence comparison
Methods in Enzymology, 1992
A simple method for global sequence comparison
Nucleic Acids Research, 1992
Current Trends and Ongoing Progress in the Computational Alignment of Biological Sequences
IEEE Access
Alignment-Free Sequence Comparison (I): Statistics and Power
Journal of Computational Biology, 2009
A new approach to sequence comparison: normalized sequence alignment
2001
Sequence alignment by rare event simulation
Proceedings of the Winter Simulation Conference, 2002
An Introduction to Sequence Similarity (“Homology”) Searching
Current Protocols in Bioinformatics, 2009
Sequence comparison by exponentially-damped alignment
Nucleic Acids Research, 1984
An Algorithm for alignment-free sequence comparison using Logical Match
2010
Improved tools for biological sequence comparison
Proceedings of the National Academy of Sciences, 1988
COMPARATIVE ANALYSIS OF DYNAMIC PROGRAMMING ALGORITHMS TO FIND SIMILARITY IN GENE SEQUENCES