Molecular rulers for measuring RNA structure: sites of crosslinking in chlorambucilyl-phenylalanyl-tRNAPhe (yeast) and chlorambucilyl-pentadecaprolyl-phenylalanyl-tRNAPhe (yeast) intramolecularly crosslinked in aqueous solution (original) (raw)

Molecular rulers with 5 or 11 prolines intramolecularly crosslink to G45 of yeast phenylalanine tRNA

Eric Wickstrom

FEBS Letters, 1981

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Site-directed cross-linking studies on the E.coli tRNA ribosome complex: determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA

Philip J Mitchell

Nucleic Acids Research, 1993

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Comparison of the tertiary structure of yeast tRNAAsp and tRNAPhe in solution

Denis Moras

Journal of Molecular Biology, 1987

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Synthesis and intramolecular crosslinking of chlorambucilyl (prolyl)n [3H]phenylalanyl-tRNAPhe (yeast), n = 0, 5, 11 and 15

Eric Wickstrom

Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, 1981

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The structure of a pre-mRNA molecule in solution determined with a site directed cross-linking reagent

John Teare

Nucleic Acids Research, 1990

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Short-Range RNA-RNA Crosslinking Methods to Determine rRNA Structure and Interactions

Stanislav Kirillov

Methods, 2001

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Design, Synthesis, and Analysis of Yeast tRNA Phe Analogs Possessing Intra- and Interhelical Disulfide Cross-Links

Jay Goodwin

Journal of The American Chemical Society, 1996

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Identification of form III conformers in tRNAPhe from Escherichia coli by intramolecular photo-cross-linking

Yolande Lemaigre-Dubreuil

Biochemistry, 1986

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Neighbourhood of the central fold of the tRNA molecule bound to the E.coli ribosome—affinity labeling studies with modified tRNAs carrying photoreactive probes attached to the dihydrouridine loop

J. Podkowinski

Nucleic Acids Research, 1991

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Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between ‘+ 1’ and ‘+ 16’ on the mRNA, downstream from the decoding site

Jutta Rinke-Appel

Nucleic Acids Research, 1993

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Chlorambucilyl [3 H]phenylalanyl-tRNA crosslinking to 50 S ribosomal subunit proteins L4, L26-27 and L18-20

Eric Wickstrom

FEBS Letters, 1981

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Atomic co-ordinates for yeast phenylalanine tRNA

Iván Canales Valenzuela

Nucleic Acids Research, 1975

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Towards the Discovery of Oligonucleotide Cross-Linking Agents

Bhaskar Halami

2019

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Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers

Emil Reisler

Protein Science, 2008

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Trans-diamminedichloroplatinum(II), a reversible RNA-protein cross-linking agent. Application to the ribosome and to an aminoacyl-tRNA synthetase/tRNA complex

Marylène Mougel, Michael Tukalo

Biochemistry, 1987

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Base-pairing between distant regions of the Escherichia coli 16 S ribosomal RNA in solution

P. Wollenzien

Journal of Molecular Biology, 1979

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Recognition by T factor of a tRNAphe yeast molecule recombined from 3′and 5′ halves; and its non messenger-dependent binding to ribosomes

Do Tien Thang

FEBS Letters, 1971

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Multiple crosslinks of proteins S7, S9, S13 to domains 3 and 4 of 16S RNA in the 30S particle

Eliane Hajnsdorf

Nucleic Acids Research, 1986

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Transit of tRNA through the Escherichia coli Ribosome. CROSS-LINKING OF THE 3' END OF tRNA TO SPECIFIC NUCLEOTIDES OF THE 23 S RIBOSOMAL RNA AT THE A, P, AND E SITES

Jacek Wower

Journal of Biological Chemistry, 2000

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Contacts between the growing peptide chain and the 23S RNA in the 50S ribosomal subunit

D. Bochkariov

Nucleic Acids Research, 1994

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Comparison of Escherichia coli tRNAPhe in the Free State, in the Ternary Complex and in the Ribosomal A and P Sites by Chemical Probing

Stephen Douthwaite

European Journal of Biochemistry, 1983

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The use of 2-iminothiolane as an RNA-protein cross-linking agent in Escherichia coli ribosomes, and the localisation on 23S RNA of sites cross-linked to proteins L4, L6, L21, L23, L27 and L29

Iwona Wower

Nucleic Acids Research, 1981

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Base-Pairing between 23S rRNA and tRNA in the Ribosomal A Site

Rachel Green

Molecular Cell, 1999

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Mechanism of Discrimination between Cognate and Non-cognate tRNs by Phenylalanyl-tRNA:Synthetase from Yeast

Detlev Riesner

European Journal of Biochemistry, 1976

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Selective isolation and detailed analysis of intra-RNA cross-links induced in the large ribosomal subunit of E. coli: a model for the tertiary structure of the tRNA binding domain in 23S RNA

Philip J Mitchell

Nucleic Acids Research, 1990

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Structure of yeast phenylalanine transfer RNA at 2.5 A resolution

Iván Canales Valenzuela

Proceedings of the National Academy of Sciences, 1975

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Crosslinking of Escherichia coli 50S ribosomal subunits with chlorambucilyl oligoprolyl phenylalanyltRNA molecular rulers

Keith Parker

Nucleic Acids Research, 1983

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The use of azidoarylimidoesters in RNA-protein cross-linking studies with Escherichia coli ribosomes

Jutta Rinke-Appel

Journal of Molecular Biology, 1980

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New RNA-protein crosslinks in domains 1 and 2 of E.coli 30S ribosomal subunits obtained by means of an intrinsic photoaffinity probe

Eliane Hajnsdorf

Nucleic Acids Research, 1989

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Cross-linking with bifunctional reagents and its application to the study of the molecular symmetry and the arrangement of subunits in hexameric protein oligomers

Yossi Tsfadia

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2010

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Affinity labeling of Escherichia coli phenylalanyl-tRNA synthetase at the binding site for tRNAPhe

Codjo Hountondji

Biochemistry, 1987

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A Distinctive RNA Fold: The Solution Structure of an Analogue of the Yeast tRNAPhe TΨC Domain

Karl Koshlap

Biochemistry, 1999

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Singly and Bifurcated Hydrogen-bonded Base-pairs in tRNA Anticodon Hairpins and Ribozymes

E. Westhof

Journal of Molecular Biology, 1999

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