Assembly and annotation of the Adineta vaga L1 genome (original) (raw)

2020

Abstract

This dataset includes:<br>1) Diploid genome assembly generated for the <i>A. vaga</i> L1 genome with SPAdes (version 3.6.0) from MiSeq reads (file 'Adineta.vaga.L1.contigs.fasta'). <br>2) Haploid sub-assembly of the <i>A. vaga</i> L1 genome (file 'Adineta.vaga.L1.haploid.segments.fasta'). This is haploid representation of the L1 genome containing mostly non-redundant genomic segments extracted from the L1 diploid contigs. <br>3) Annotation of protein-coding genes produced for the <i>A. vaga</i> L1 diploid contigs in the GTF format (78,303 gene models from 75,877 loci; file 'Adineta.vaga.L1.contigs.annotation.gtf').<br>4) List of gene models from the filtered gene set (file 'Adineta.vaga.L1.contigs.annotation.transcripts.filtered.txt'). This set includes 61,531 gene models retained after filtering aimed at removing pseudogenes and putative annotation errors. For loci with more than one gene mo...

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