IDENTIFICATION AND INHERITANCE OF THE FIRST GENE (Rdc1) OF RESISTANCE TO SOYBEAN STEM CANKER (Diaporthe phaseolorum var. caulivora) (original) (raw)

Molecular mapping of the genomic region conferring resistance to soybean stem canker in Hutcheson soybean

Molecular Breeding, 2017

Genetic resistance to soybean stem canker, caused by the fungus Diaporthe phaseolorum var. meridionalis (Dpm), is controlled by five major, dominant, nonallelic genes Rdm1 to Rdm5. A genomic region containing the Rdm4 and Rdm5 genes was first described in Hutcheson soybean, where they were found to confer specific resistance to Argentinean physiological races of Dpm. Here, we report the genetic mapping of Rdm4 and Rdm5 loci using two pheno-and genotypically characterized F 2:3 populations derived from Hutcheson cultivar. The mapping populations were screened with amplified fragment length polymorphism (AFLP) markers using bulk segregant analysis, and with simple sequence repeat (SSR) markers. Linkage analysis indicated that the Rdm4 and Rdm5 resistance loci were located in a genomic region collinear with the molecular linkage group (MLG) A2 (chromosome 8) of the soybean genetic map. The linkage group contains two SSR markers, Sat_162 and Satt233, flanking the Rdm4 and Rdm5 loci. These SSR will be useful to increase the efficiency of selection in breeding programs aimed to incorporate Rdm4 and Rdm5 genes into soybean elite germplasm.

Association mapping of a locus that confers Southern stem canker resistance in soybean

Background Southern stem canker (SSC), caused by Diaporthe aspalathi (E. Jansen, Castl. & Crous) is an important soybean disease, which has been responsible for severe losses in the past. The main strategy to control this fungus is through the introgression of resistance genes. So far, five main loci have been associated with resistance to Southern stem canker. However, there is a lack of information about useful allelic variation at these loci. In this work, a genome-wide association study (GWAS) was performed to identify allelic variation associated with resistance against Diaporthe aspalathi and to provide molecular markers useful in breeding programs. Results We characterized the response to Southern stem canker infection in a panel of 295 accessions from different regions of the world including important Brazilian elite cultivars. Using a GBS approach, the panel was genotyped and we identified marker loci associated with Diaporthe aspalathi resistance using GWAS analysis. We id...

Specific boundaries between the causal agents of the soybean stem canker

2014

Pathogens within the Diaporthe complex cause seed decay, stem blight and stem canker on soybean, representing a serious threat for this crop species. We herein utilize worldwide sequence data retrieved from Genbank in order to assess the species boundaries between the soybean stem canker causal agents, and define whether or not they should be regarded as members of the same biological species. These studies were complemented with compatibility tests, in order to validate our findings from a biological standpoint. Species delimitation assays supported the occurrence of a speciation event between D. caulivora and D. phaseolourm var. meridionalis. A speciation hypothesis between D. aspalathi and D. phaseolourm var. meridionalis was also supported, based on three reciprocally monophyletic substitutions at locus EF1-α. Compatibility tests further validated species delimitation assays indicating that D. caulivora has developed barriers to gene exchange with D. phaseolorum var. meridionalis. Clarification of the specific boundaries of the SSC pathogens and related entities will be an important asset to future research in soybean pathology, epidemiology and breeding.

Development of SCAR marker linked to stem canker resistance gene in soybean

CROP BREEDING …, 2007

Stem canker caused by the fungus Diaporthe phaseolorum f. sp. meridionalis is a disease that limits soybean cultivation. Phenotypic evaluations aiming at disease resistance require labor-intensive processes, as for instance handling and transport of phytopathogens. The use of DNA markers in the selective procedures eases certain phases, besides being practical, safe and reliable. A RAPD fragment of 588pb was identified among bulks of resistant and susceptible plants in the cross BR92-15454 (R) x IAC-11 (S). Through co-segregation, the distance between the resistance locus and the fragment was estimated at 7.4 ± 2.1 cM, with a Lod max. of 23.072 (first year) and at 6.0 ± 3.4 cM with a Lod max. of 7.806 (second year). The fragment was converted into a SCAR marker and digested with enzyme Hinc II, which made the classification in homozygous resistant, heterozygous resistant and susceptible plants possible. This SCAR marker is suitable for use in the improvement program conducted in Jaboticabal.

Differential expression of distinct soybean resistance genes interacting with Argentinean isolates of Diaporthe phaseolorum var. meridionalis

European Journal of Plant Pathology, 2012

Soybean Stem Canker (SSC), caused by Diaporthe phaseolorum var. meridionalis (Dpm), is an important disease of soybean in Argentina. There are five known dominant genes that confer resistance to SSC, Rdm1 to Rdm5. Particularly, Rdm2 was identified in cv. Tracy-M and then it was stabilized in the breeding line T2. The Rdm4 gene was first identified in cv. Hutcheson. More recently it was found that this gene was linked to the Rdm5 gene, defining the Rdm4-5 resistance region in Hutcheson. The objective of this work was to analyze the behaviour of the dominant Rdm2, Rdm4 and Rdm5 genes interacting with the CE109 and CE112 local physiological races of Dpm, in different susceptible backgrounds (genotypes RA702 and J77-339). Rdm4 and Rdm5 segregated phenotypically as completely dominant genes in the specific interactions with the CE109 and CE112 isolates, respectively, in both susceptible backgrounds. Similarly, Rdm2 segregated as expected for a complete dominant gene in the specific interaction with the CE109 isolate, in both susceptible backgrounds. However, when interacting with the CE112 isolate, the Rdm2 gene did not segregate as expected for a completely dominant gene, neither in RA702 nor in J77-339 susceptible background. The distorted segregation of the Rdm2 gene was due to incomplete penetrance. To the best of our knowledge this is the first report documenting changes in the degree of penetrance of a soybean resistance gene (Rdm2) depending upon the physiological race of Dpm which interacts with and the genetic background in which the Rdm gene is being expressed.

A method for screening soybean seedlings for resistance to northern stem canker caused by Diaporthe phaseolorum var. caulivora

Canadian Journal of Plant Science, 2007

Five soybean varieties, Williams, Harosoy, AC Hime, Coles and Leo were inoculated 2 and 4 wk after planting with Diaporthe phaseolorum var. caulivora to determine if differences in resistance to stem canker could be detected in the early stages of plant development. Seedling stems were severed above the unifoliolate leaves and inoculum was applied to the cut surface. Stem lesion lengths were measured at 1, 2 and 3 wk following inoculation. The mean lesion length on seedlings inoculated 2 wk after planting (27.2 mm) was significantly less than seedlings inoculated 4 wk after planting (44.5 mm). Based on mean lesion length, Williams was the most susceptible variety followed by Harosoy. AC Hime, Coles and Leo were equally resistant. Stem canker development measured at 2 and 3 wk following inoculation was negatively correlated with stem moisture at the time of inoculation suggesting that stem moisture is important in the development and severity of stem canker. Key words: Diaporthe phas...

Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development

Background Southern stem canker (SSC), caused by Diaporthe aspalathi (E. Jansen, Castl. & Crous), is an important soybean disease that has been responsible for severe losses in the past. The main strategy for controlling this fungus involves the introgression of resistance genes. Thus far, five main loci have been associated with resistance to SSC. However, there is a lack of information about useful allelic variation at these loci. In this work, a genome-wide association study (GWAS) was performed to identify allelic variation associated with resistance against Diaporthe aspalathi and to provide molecular markers that will be useful in breeding programs. Results We characterized the response to SSC infection in a panel of 295 accessions from different regions of the world, including important Brazilian elite cultivars. Using a GBS approach, the panel was genotyped, and we identified marker loci associated with Diaporthe aspalathi resistance through GWAS. We identified 19 SNPs assoc...

Field and Greenhouse Evaluations of Stem Canker Resistance in Soybean

Crop Science, 1988

Greenhouse screening using infested toothpicks was compared to field evaluation of soybean [Glycine max (L.) Merr.) breeding lines for resistance to stem canker disease, caused by southern strains of Diaporthe phaseolonm (Cke. & £11. (Sacc.) var. caulivora Athow and Caldwell (Dpc). Field screenings are reliable indicators of resistance, but often the disease does not develop naturally in field screening nurseries. Thirty-seven random F 4:6 lines from the cross 'Hutton' (susceptible) X 'Tracy M' (resistant) were evaluated for their reaction to Dpc in the field (two locations, 2 yr) under natural infestation and infection conditions, and in the greenhouse (three experiments) with artificial inoculation using infested toothpicks. Our objectives were to compare field and greehouse screening and to determine the usefulness of greenhouse inoculation in predicting the yield and disease reaction of breeding lines when these lines were subjected to natural field infection conditions. Field screening based on symptoms and yield was highly effective in identifying resistant genotypes. Heritabilities for yield and disease ratings in the field were 87 and 92%, respectively. The toothpick inoculation procedure used in the greenhouse was effective with each of three Dpc isolates (different in geographic origin from the field location) in identifying the genotypes that showed highest levels of disease resistance in the field. Phenotypic correlations between greenhouse ratings and yield in the infested field ranged from-0.71 to-0.61. Results indicated that selection based on greenhouse screening can be an effective alternative to field screening when resistance is derived from Tracy M.