CellMixS (original) (raw)

This is the released version of CellMixS; for the devel version, seeCellMixS.

Evaluate Cellspecific Mixing

Bioconductor version: Release (3.20)

CellMixS provides metrics and functions to evaluate batch effects, data integration and batch effect correction in single cell trancriptome data with single cell resolution. Results can be visualized and summarised on different levels, e.g. on cell, celltype or dataset level.

Author: Almut Lütge [aut, cre]

Maintainer: Almut Lütge <almut.lue at gmail.com>

Citation (from within R, enter citation("CellMixS")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CellMixS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellMixS")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.