ClustAll (original) (raw)

This is the released version of ClustAll; for the devel version, seeClustAll.

ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases

Bioconductor version: Release (3.21)

Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).

Author: Asier Ortega-Legarreta [aut, cre] ORCID iD ORCID: 0009-0000-3563-5362 , Sara Palomino-Echeverria [aut]

Maintainer: Asier Ortega-Legarreta

Citation (from within R, enter citation("ClustAll")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ClustAll")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClustAll")

Details

biocViews Clustering, DimensionReduction, PrincipalComponent, Software, StatisticalMethod
Version 1.4.0
In Bioconductor since BioC 3.19 (R-4.4) (1 year)
License GPL-2
Depends R (>= 4.2.0)
Imports FactoMineR, bigstatsr, clValid, doSNOW, parallel, foreach, dplyr, fpc, mice, modeest, flock, networkD3, methods, ComplexHeatmap, cluster, RColorBrewer, circlize, grDevices, ggplot2, grid, stats, utils, pbapply
System Requirements
URL

See More

Suggests RUnit, knitr, BiocGenerics, rmarkdown, BiocStyle, roxygen2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ClustAll_1.4.0.tar.gz
Windows Binary (x86_64) ClustAll_1.4.0.zip
macOS Binary (x86_64) ClustAll_1.4.0.tgz
macOS Binary (arm64) ClustAll_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ClustAll
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ClustAll
Bioc Package Browser https://code.bioconductor.org/browse/ClustAll/
Package Short Url https://bioconductor.org/packages/ClustAll/
Package Downloads Report Download Stats