GateFinder (original) (raw)

This is the released version of GateFinder; for the devel version, seeGateFinder.

Projection-based Gating Strategy Optimization for Flow and Mass Cytometry

Bioconductor version: Release (3.21)

Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.

Author: Nima Aghaeepour , Erin F. Simonds <erin.simonds at gmail.com>

Maintainer: Nima Aghaeepour

Citation (from within R, enter citation("GateFinder")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GateFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GateFinder")

Details

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Follow Installation instructions to use this package in your R session.