MMDiff2 (original) (raw)

This is the released version of MMDiff2; for the devel version, seeMMDiff2.

Statistical Testing for ChIP-Seq data sets

Bioconductor version: Release (3.20)

This package detects statistically significant differences between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).

Author: Gabriele Schweikert [cre, aut], David Kuo [aut]

Maintainer: Gabriele Schweikert

Citation (from within R, enter citation("MMDiff2")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMDiff2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMDiff2")

Details

See More

Package Archives

Follow Installation instructions to use this package in your R session.