PhenoGeneRanker (original) (raw)

This is the released version of PhenoGeneRanker; for the devel version, seePhenoGeneRanker.

PhenoGeneRanker: A gene and phenotype prioritization tool

Bioconductor version: Release (3.21)

This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.

Author: Cagatay Dursun [aut, cre]

Maintainer: Cagatay Dursun

Citation (from within R, enter citation("PhenoGeneRanker")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PhenoGeneRanker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PhenoGeneRanker")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.