VaSP (original) (raw)

This is the released version of VaSP; for the devel version, seeVaSP.

Quantification and Visualization of Variations of Splicing in Population

Bioconductor version: Release (3.20)

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)

Author: Huihui Yu [aut, cre] , Qian Du [aut] , Chi Zhang [aut]

Maintainer: Huihui Yu

Citation (from within R, enter citation("VaSP")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("VaSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VaSP")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.