cellity (original) (raw)
This is the released version of cellity; for the devel version, seecellity.
Quality Control for Single-Cell RNA-seq Data
Bioconductor version: Release (3.21)
A support vector machine approach to identifying and filtering low quality cells from single-cell RNA-seq datasets.
Author: Tomislav Illicic, Davis McCarthy
Maintainer: Tomislav Ilicic
Citation (from within R, enter citation("cellity")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellity")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellity")Details
| biocViews | DimensionReduction, GeneExpression, ImmunoOncology, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, Software, SupportVectorMachine, Transcriptomics, Visualization |
|---|---|
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3) |
| Imports | AnnotationDbi, e1071, ggplot2, graphics, grDevices, grid, mvoutlier, org.Hs.eg.db, org.Mm.eg.db, robustbase, stats, topGO, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, caret, knitr, testthat, rmarkdown |
|---|---|
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellity_1.36.0.tar.gz |
|---|---|
| Windows Binary (x86_64) | cellity_1.36.0.zip (64-bit only) |
| macOS Binary (x86_64) | cellity_1.36.0.tgz |
| macOS Binary (arm64) | cellity_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellity |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellity |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellity/ |
| Package Short Url | https://bioconductor.org/packages/cellity/ |
| Package Downloads Report | Download Stats |