derfinderHelper (original) (raw)
This is the released version of derfinderHelper; for the devel version, seederfinderHelper.
derfinder helper package
Bioconductor version: Release (3.21)
Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.
Author: Leonardo Collado-Torres [aut, cre] 
ORCID: 0000-0003-2140-308X , Andrew E. Jaffe [aut] ORCID: 0000-0001-6886-1454 , Jeffrey T. Leek [aut, ths] ORCID: 0000-0002-2873-2671
Maintainer: Leonardo Collado-Torres
Citation (from within R, enter citation("derfinderHelper")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("derfinderHelper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("derfinderHelper")Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
|---|---|
| Version | 1.42.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.2) |
| Imports | IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2) |
| System Requirements | |
| URL | https://github.com/leekgroup/derfinderHelper |
| Bug Reports | https://support.bioconductor.org/t/derfinderHelper |
See More
| Suggests | sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr |
|---|---|
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | derfinder |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | derfinderHelper_1.42.0.tar.gz |
|---|---|
| Windows Binary (x86_64) | derfinderHelper_1.42.0.zip |
| macOS Binary (x86_64) | derfinderHelper_1.42.0.tgz |
| macOS Binary (arm64) | derfinderHelper_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/derfinderHelper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/derfinderHelper |
| Bioc Package Browser | https://code.bioconductor.org/browse/derfinderHelper/ |
| Package Short Url | https://bioconductor.org/packages/derfinderHelper/ |
| Package Downloads Report | Download Stats |