fcScan (original) (raw)

This is the released version of fcScan; for the devel version, seefcScan.

fcScan for detecting clusters of coordinates with user defined options

Bioconductor version: Release (3.21)

This package is used to detect combination of genomic coordinates falling within a user defined window size along with user defined overlap between identified neighboring clusters. It can be used for genomic data where the clusters are built on a specific chromosome or specific strand. Clustering can be performed with a "greedy" option allowing thus the presence of additional sites within the allowed window size.

Author: Abdullah El-Kurdi [aut], Ghiwa khalil [aut], Georges Khazen [ctb], Pierre Khoueiry [aut, cre]

Maintainer: Pierre Khoueiry Abdullah El-Kurdi

Citation (from within R, enter citation("fcScan")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fcScan")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fcScan")

Details

See More

Package Archives

Follow Installation instructions to use this package in your R session.