limmaGUI (original) (raw)
This is the released version of limmaGUI; for the devel version, seelimmaGUI.
GUI for limma Package With Two Color Microarrays
Bioconductor version: Release (3.20)
A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.
Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]
Maintainer: Gordon Smyth
Citation (from within R, enter citation("limmaGUI")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("limmaGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("limmaGUI")| about.html | HTML | |
|---|---|---|
| CustMenu.html | HTML | |
| Extracting limma objects from limmaGUI files | ||
| import.html | HTML | |
| index.html | HTML | |
| InputFiles.html | HTML | |
| lgDevel.html | HTML | |
| limmaGUI Vignette | R Script | |
| LinModIntro.pdf | ||
| windowsFocus.html | HTML | |
| Reference Manual |
Details
| biocViews | BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray |
|---|---|
| Version | 1.82.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils |
| System Requirements | |
| URL | http://bioinf.wehi.edu.au/limmaGUI/ |
See More
| Suggests | |
|---|---|
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | limmaGUI_1.82.0.tar.gz |
|---|---|
| Windows Binary (x86_64) | limmaGUI_1.82.0.zip |
| macOS Binary (x86_64) | limmaGUI_1.82.0.tgz |
| macOS Binary (arm64) | limmaGUI_1.82.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/limmaGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/limmaGUI |
| Bioc Package Browser | https://code.bioconductor.org/browse/limmaGUI/ |
| Package Short Url | https://bioconductor.org/packages/limmaGUI/ |
| Package Downloads Report | Download Stats |