made4 (original) (raw)

This is the released version of made4; for the devel version, seemade4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: Release (3.21)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane

Citation (from within R, enter citation("made4")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")

Details

biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version 1.82.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
System Requirements
URL http://www.hsph.harvard.edu/aedin-culhane/

See More

Suggests affy, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me omicade4
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package made4_1.82.0.tar.gz
Windows Binary (x86_64) made4_1.82.0.zip
macOS Binary (x86_64) made4_1.82.0.tgz
macOS Binary (arm64) made4_1.82.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/made4
Bioc Package Browser https://code.bioconductor.org/browse/made4/
Package Short Url https://bioconductor.org/packages/made4/
Package Downloads Report Download Stats