selectKSigs (original) (raw)

This is the released version of selectKSigs; for the devel version, seeselectKSigs.

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Bioconductor version: Release (3.21)

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]

Maintainer: Zhi Yang

Citation (from within R, enter citation("selectKSigs")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("selectKSigs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("selectKSigs")

Details

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Follow Installation instructions to use this package in your R session.