spoon (original) (raw)

This is the released version of spoon; for the devel version, seespoon.

Address the Mean-variance Relationship in Spatial Transcriptomics Data

Bioconductor version: Release (3.21)

This package addresses the mean-variance relationship in spatially resolved transcriptomics data. Precision weights are generated for individual observations using Empirical Bayes techniques. These weights are used to rescale the data and covariates, which are then used as input in spatially variable gene detection tools.

Author: Kinnary Shah [aut, cre] ORCID: 0000-0001-7098-2116 , Boyi Guo [aut] ORCID: 0000-0003-2950-2349 , Stephanie C. Hicks [aut] ORCID: 0000-0002-7858-0231

Maintainer: Kinnary Shah

Citation (from within R, enter citation("spoon")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spoon")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spoon")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.