cgMLST.org cgMLST.org (original) (raw)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the MBioSEQ Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

We care about your privacy. Read our privacy policy.

Scheme Target Count CT Count
Acinetobacter baumannii cgMLST 2,390 8,652
Bacillus anthracis cgMLST 3,803 225
Bordetella pertussis cgMLST 2,983 449
Brucella melitensis cgMLST 2,704 172
Brucella spp. cgMLST 1,764 661
Burkholderia mallei (FLI) cgMLST 2,838 30
Burkholderia mallei (RKI) cgMLST 3,328 34
Burkholderia pseudomallei cgMLST 4,221 545
Campylobacter jejuni/coli cgMLST 637 10,571
Citrobacter freundii cgMLST 3,250 623
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST 2,307 243
Clostridioides difficile cgMLST 2,147 9,643
Clostridium perfringens cgMLST 1,431 198
Corynebacterium diphtheriae cgMLST 1,553 456
Corynebacterium pseudotuberculosis cgMLST 1,577 99
Cronobacter sakazakii/malonaticus cgMLST 2,831 219
Enterobacter hormaechei cgMLST 2,178 666
Enterococcus faecalis cgMLST 1,972 4,814
Enterococcus faecium cgMLST 1,423 10,390
Escherichia coli cgMLST 2,513 74,465
Francisella tularensis cgMLST 1,147 266
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST 2,536 929
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST 2,358 22,401
Legionella pneumophila cgMLST 1,521 2,053
Listeria monocytogenes cgMLST 1,701 24,682
Morganella morganii cgMLST 2,462 32
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST 2,891 44,942
Mycobacteroides abscessus cgMLST 2,904 1,081
Mycoplasma gallisepticum cgMLST 425 72
Paenibacillus larvae cgMLST 2,419 192
Proteus mirabilis cgMLST 2,574 140
Providencia stuartii cgMLST 3,079 21
Pseudomonas aeruginosa cgMLST 3,867 8,731
Salmonella enterica cgMLST 3,002 33,199
Serratia marcescens cgMLST 2,692 2,170
Staphylococcus argenteus cgMLST 2,168 3
Staphylococcus aureus cgMLST 1,861 56,145
Staphylococcus capitis cgMLST 1,492 497
Streptococcus pyogenes cgMLST 1,095 1,475
Yersinia enterocolitica cgMLST 2,582 1,013