Evolutionary recruitment of biochemically specialized subdivisions of Family I within the protein superfamily of aminotransferases. (original) (raw)
- Journal List
- J Bacteriol
- v.178(8); 1996 Apr
- PMC177921
J Bacteriol. 1996 Apr; 178(8): 2161–2171.
Department of Microbiology and Cell Science, University of Florida, Gainesville 32611, USA.
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- Alexander FW, Sandmeier E, Mehta PK, Christen P. Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families. Eur J Biochem. 1994 Feb 1;219(3):953–960. [PubMed] [Google Scholar]
- Alfano JR, Kahn ML. Isolation and characterization of a gene coding for a novel aspartate aminotransferase from Rhizobium meliloti. J Bacteriol. 1993 Jul;175(13):4186–4196. [PMC free article] [PubMed] [Google Scholar]
- Birolo L, Arnone MI, Cubellis MV, Andreotti G, Nitti G, Marino G, Sannia G. The active site of Sulfolobus solfataricus aspartate aminotransferase. Biochim Biophys Acta. 1991 Nov 15;1080(3):198–204. [PubMed] [Google Scholar]
- Bontempi EJ, Búa J, Aslund L, Porcel B, Segura EL, Henriksson J, Orn A, Pettersson U, Ruiz AM. Isolation and characterization of a gene from Trypanosoma cruzi encoding a 46-kilodalton protein with homology to human and rat tyrosine aminotransferase. Mol Biochem Parasitol. 1993 Jun;59(2):253–262. [PubMed] [Google Scholar]
- Chu L, Burgum A, Kolodrubetz D, Holt SC. The 46-kilodalton-hemolysin gene from Treponema denticola encodes a novel hemolysin homologous to aminotransferases. Infect Immun. 1995 Nov;63(11):4448–4455. [PMC free article] [PubMed] [Google Scholar]
- Conover RK, Doolittle WF. Characterization of a gene involved in histidine biosynthesis in Halobacterium (Haloferax) volcanii: isolation and rapid mapping by transformation of an auxotroph with cosmid DNA. J Bacteriol. 1990 Jun;172(6):3244–3249. [PMC free article] [PubMed] [Google Scholar]
- Crouzet J, Cauchois L, Blanche F, Debussche L, Thibaut D, Rouyez MC, Rigault S, Mayaux JF, Cameron B. Nucleotide sequence of a Pseudomonas denitrificans 5.4-kilobase DNA fragment containing five cob genes and identification of structural genes encoding S-adenosyl-L-methionine: uroporphyrinogen III methyltransferase and cobyrinic acid a,c-diamide synthase. J Bacteriol. 1990 Oct;172(10):5968–5979. [PMC free article] [PubMed] [Google Scholar]
- Cubellis MV, Rozzo C, Nitti G, Arnone MI, Marino G, Sannia G. Cloning and sequencing of the gene coding for aspartate aminotransferase from the thermoacidophilic archaebacterium Sulfolobus solfataricus. Eur J Biochem. 1989 Dec 8;186(1-2):375–381. [PubMed] [Google Scholar]
- Delorme C, Ehrlich SD, Renault P. Histidine biosynthesis genes in Lactococcus lactis subsp. lactis. J Bacteriol. 1992 Oct;174(20):6571–6579. [PMC free article] [PubMed] [Google Scholar]
- Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM, et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 1995 Jul 28;269(5223):496–512. [PubMed] [Google Scholar]
- Fotheringham IG, Dacey SA, Taylor PP, Smith TJ, Hunter MG, Finlay ME, Primrose SB, Parker DM, Edwards RM. The cloning and sequence analysis of the aspC and tyrB genes from Escherichia coli K12. Comparison of the primary structures of the aspartate aminotransferase and aromatic aminotransferase of E. coli with those of the pig aspartate aminotransferase isoenzymes. Biochem J. 1986 Mar 15;234(3):593–604. [PMC free article] [PubMed] [Google Scholar]
- Gantt JS, Larson RJ, Farnham MW, Pathirana SM, Miller SS, Vance CP. Aspartate aminotransferase in effective and ineffective alfalfa nodules : cloning of a cDNA and determination of enzyme activity, protein, and mRNA levels. Plant Physiol. 1992 Mar;98(3):868–878. [PMC free article] [PubMed] [Google Scholar]
- Gelfand DH, Steinberg RA. Escherichia coli mutants deficient in the aspartate and aromatic amino acid aminotransferases. J Bacteriol. 1977 Apr;130(1):429–440. [PMC free article] [PubMed] [Google Scholar]
- Grange T, Guénet C, Dietrich JB, Chasserot S, Fromont M, Befort N, Jami J, Beck G, Pictet R. Complete complementary DNA of rat tyrosine aminotransferase messenger RNA. Deduction of the primary structure of the enzyme. J Mol Biol. 1985 Jul 20;184(2):347–350. [PubMed] [Google Scholar]
- Grisolia V, Carlomagno MS, Nappo AG, Bruni CB. Cloning, structure, and expression of the Escherichia coli K-12 hisC gene. J Bacteriol. 1985 Dec;164(3):1317–1323. [PMC free article] [PubMed] [Google Scholar]
- Gu W, Zhao G, Eddy C, Jensen RA. Imidazole acetol phosphate aminotransferase in Zymomonas mobilis: molecular genetic, biochemical, and evolutionary analyses. J Bacteriol. 1995 Mar;177(6):1576–1584. [PMC free article] [PubMed] [Google Scholar]
- Hayashi H, Inoue K, Nagata T, Kuramitsu S, Kagamiyama H. Escherichia coli aromatic amino acid aminotransferase: characterization and comparison with aspartate aminotransferase. Biochemistry. 1993 Nov 16;32(45):12229–12239. [PubMed] [Google Scholar]
- Henner DJ, Band L, Flaggs G, Chen E. The organization and nucleotide sequence of the Bacillus subtilis hisH, tyrA and aroE genes. Gene. 1986;49(1):147–152. [PubMed] [Google Scholar]
- Hinshelwood S, Stoker NG. Cloning of mycobacterial histidine synthesis genes by complementation of a Mycobacterium smegmatis auxotroph. Mol Microbiol. 1992 Oct;6(19):2887–2895. [PubMed] [Google Scholar]
- Huynh QK, Sakakibara R, Watanabe T, Wada H. The complete amino acid sequence of mitochondrial glutamic oxaloacetic transaminase from rat liver. J Biochem. 1981 Sep;90(3):863–875. [PubMed] [Google Scholar]
- Ishiguro M, Suzuki M, Takio K, Matsuzawa T, Titani K. Complete amino acid sequence of rat liver cytosolic alanine aminotransferase. Biochemistry. 1991 Jun 18;30(24):6048–6053. [PubMed] [Google Scholar]
- Ishiguro M, Takio K, Suzuki M, Oyama R, Matsuzawa T, Titani K. Complete amino acid sequence of human liver cytosolic alanine aminotransferase (GPT) determined by a combination of conventional and mass spectral methods. Biochemistry. 1991 Oct 29;30(43):10451–10457. [PubMed] [Google Scholar]
- Jensen RA. Enzyme recruitment in evolution of new function. Annu Rev Microbiol. 1976;30:409–425. [PubMed] [Google Scholar]
- Jensen RA, Calhoun DH. Intracellular roles of microbial aminotransferases: overlap enzymes across different biochemical pathways. Crit Rev Microbiol. 1981;8(3):229–266. [PubMed] [Google Scholar]
- Kamitori S, Okamoto A, Hirotsu K, Higuchi T, Kuramitsu S, Kagamiyama H, Matsuura Y, Katsube Y. Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution. J Biochem. 1990 Aug;108(2):175–184. [PubMed] [Google Scholar]
- Kaneko T, Tanaka A, Sato S, Kotani H, Sazuka T, Miyajima N, Sugiura M, Tabata S. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome. DNA Res. 1995 Aug 31;2(4):153–198. [PubMed] [Google Scholar]
- Kirsch JF, Eichele G, Ford GC, Vincent MG, Jansonius JN, Gehring H, Christen P. Mechanism of action of aspartate aminotransferase proposed on the basis of its spatial structure. J Mol Biol. 1984 Apr 15;174(3):497–525. [PubMed] [Google Scholar]
- Köhler E, Seville M, Jäger J, Fotheringham I, Hunter M, Edwards M, Jansonius JN, Kirschner K. Significant improvement to the catalytic properties of aspartate aminotransferase: role of hydrophobic and charged residues in the substrate binding pocket. Biochemistry. 1994 Jan 11;33(1):90–97. [PubMed] [Google Scholar]
- Kuramitsu S, Inoue K, Ogawa T, Ogawa H, Kagamiyama H. Aromatic amino acid aminotransferase of Escherichia coli: nucleotide sequence of the tyrB gene. Biochem Biophys Res Commun. 1985 Nov 27;133(1):134–139. [PubMed] [Google Scholar]
- Limauro D, Avitabile A, Cappellano C, Puglia AM, Bruni CB. Cloning and characterization of the histidine biosynthetic gene cluster of Streptomyces coelicolor A3(2). Gene. 1990 May 31;90(1):31–41. [PubMed] [Google Scholar]
- Malashkevich VN, Onuffer JJ, Kirsch JF, Jansonius JN. Alternating arginine-modulated substrate specificity in an engineered tyrosine aminotransferase. Nat Struct Biol. 1995 Jul;2(7):548–553. [PubMed] [Google Scholar]
- Mehta PK, Christen P. Homology of pyridoxal-5'-phosphate-dependent aminotransferases with the cobC (cobalamin synthesis), nifS (nitrogen fixation), pabC (p-aminobenzoate synthesis) and malY (abolishing endogenous induction of the maltose system) gene products. Eur J Biochem. 1993 Jan 15;211(1-2):373–376. [PubMed] [Google Scholar]
- Mehta PK, Hale TI, Christen P. Evolutionary relationships among aminotransferases. Tyrosine aminotransferase, histidinol-phosphate aminotransferase, and aspartate aminotransferase are homologous proteins. Eur J Biochem. 1989 Dec 8;186(1-2):249–253. [PubMed] [Google Scholar]
- Mehta PK, Hale TI, Christen P. Aminotransferases: demonstration of homology and division into evolutionary subgroups. Eur J Biochem. 1993 Jun 1;214(2):549–561. [PubMed] [Google Scholar]
- Montemartini M, Santomé JA, Cazzulo JJ, Nowicki C. Purification and partial structural and kinetic characterization of tyrosine aminotransferase from epimastigotes of Trypanosoma cruzi. Biochem J. 1993 Jun 15;292(Pt 3):901–906. [PMC free article] [PubMed] [Google Scholar]
- Morin PJ, Subramanian GS, Gilmore TD. AAT1, a gene encoding a mitochondrial aspartate aminotransferase in Saccharomyces cerevisiae. Biochim Biophys Acta. 1992 Dec 29;1171(2):211–214. [PubMed] [Google Scholar]
- Mosca M, Cozzi L, Breton J, Speciale C, Okuno E, Schwarcz R, Benatti L. Molecular cloning of rat kynurenine aminotransferase: identity with glutamine transaminase K. FEBS Lett. 1994 Oct 10;353(1):21–24. [PubMed] [Google Scholar]
- Nester EW, Montoya AL. An enzyme common to histidine and aromatic amino acid biosynthesis in Bacillus subtilis. J Bacteriol. 1976 May;126(2):699–705. [PMC free article] [PubMed] [Google Scholar]
- Nishiwaki K, Hayashi N, Irie S, Chung DH, Harashima S, Oshima Y. Structure of the yeast HIS5 gene responsive to general control of amino acid biosynthesis. Mol Gen Genet. 1987 Jun;208(1-2):159–167. [PubMed] [Google Scholar]
- Onuffer JJ, Kirsch JF. Redesign of the substrate specificity of Escherichia coli aspartate aminotransferase to that of Escherichia coli tyrosine aminotransferase by homology modeling and site-directed mutagenesis. Protein Sci. 1995 Sep;4(9):1750–1757. [PMC free article] [PubMed] [Google Scholar]
- Ovchinnikov YA, Egorov CA, Aldanova NA, Feigina MY, Lipkin VM, Abdulaev NG, Grishin EV, Kiselev AP, Modyanov NN, Braunstein AE, et al. The complete amino acid sequence of cytoplasmic aspartate aminotransferase from pig heart. FEBS Lett. 1973 Jan 1;29(1):31–34. [PubMed] [Google Scholar]
- Parsot C. A common origin for enzymes involved in the terminal step of the threonine and tryptophan biosynthetic pathways. Proc Natl Acad Sci U S A. 1987 Aug;84(15):5207–5210. [PMC free article] [PubMed] [Google Scholar]
- Perego M, Cole SP, Burbulys D, Trach K, Hoch JA. Characterization of the gene for a protein kinase which phosphorylates the sporulation-regulatory proteins Spo0A and Spo0F of Bacillus subtilis. J Bacteriol. 1989 Nov;171(11):6187–6196. [PMC free article] [PubMed] [Google Scholar]
- Perry S, Harries H, Scholfield C, Lock T, King L, Gibson G, Goldfarb P. Molecular cloning and expression of a cDNA for human kidney cysteine conjugate beta-lyase. FEBS Lett. 1995 Mar 6;360(3):277–280. [PubMed] [Google Scholar]
- Perry SJ, Schofield MA, MacFarlane M, Lock EA, King LJ, Gibson GG, Goldfarb PS. Isolation and expression of a cDNA coding for rat kidney cytosolic cysteine conjugate beta-lyase. Mol Pharmacol. 1993 May;43(5):660–665. [PubMed] [Google Scholar]
- Pollich M, Jock S, Klug G. Identification of a gene required for the oxygen-regulated formation of the photosynthetic apparatus of Rhodobacter capsulatus. Mol Microbiol. 1993 Nov;10(4):749–757. [PubMed] [Google Scholar]
- Reidl J, Boos W. The malX malY operon of Escherichia coli encodes a novel enzyme II of the phosphotransferase system recognizing glucose and maltose and an enzyme abolishing the endogenous induction of the maltose system. J Bacteriol. 1991 Aug;173(15):4862–4876. [PMC free article] [PubMed] [Google Scholar]
- Rossol I, Pühler A. The Corynebacterium glutamicum aecD gene encodes a C-S lyase with alpha, beta-elimination activity that degrades aminoethylcysteine. J Bacteriol. 1992 May;174(9):2968–2977. [PMC free article] [PubMed] [Google Scholar]
- Sandmeier E, Hale TI, Christen P. Multiple evolutionary origin of pyridoxal-5'-phosphate-dependent amino acid decarboxylases. Eur J Biochem. 1994 May 1;221(3):997–1002. [PubMed] [Google Scholar]
- Schultz CJ, Coruzzi GM. The aspartate aminotransferase gene family of Arabidopsis encodes isoenzymes localized to three distinct subcellular compartments. Plant J. 1995 Jan;7(1):61–75. [PubMed] [Google Scholar]
- Seville M, Vincent MG, Hahn K. Modeling the three-dimensional structures of bacterial aminotransferases. Biochemistry. 1988 Nov 1;27(22):8344–8349. [PubMed] [Google Scholar]
- Smith DL, Almo SC, Toney MD, Ringe D. 2.8-A-resolution crystal structure of an active-site mutant of aspartate aminotransferase from Escherichia coli. Biochemistry. 1989 Oct 3;28(20):8161–8167. [PubMed] [Google Scholar]
- Sofia HJ, Burland V, Daniels DL, Plunkett G, 3rd, Blattner FR. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Nucleic Acids Res. 1994 Jul 11;22(13):2576–2586. [PMC free article] [PubMed] [Google Scholar]
- Son D, Sugiyama T. Molecular cloning of an alanine aminotransferase from NAD-malic enzyme type C4 plant Panicum miliaceum. Plant Mol Biol. 1992 Nov;20(4):705–713. [PubMed] [Google Scholar]
- Sung MH, Tanizawa K, Tanaka H, Kuramitsu S, Kagamiyama H, Hirotsu K, Okamoto A, Higuchi T, Soda K. Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization. J Biol Chem. 1991 Feb 5;266(4):2567–2572. [PubMed] [Google Scholar]
- Sung MH, Tanizawa K, Tanaka H, Kuramitsu S, Kagamiyama H, Soda K. Purification and characterization of thermostable aspartate aminotransferase from a thermophilic Bacillus species. J Bacteriol. 1990 Mar;172(3):1345–1351. [PMC free article] [PubMed] [Google Scholar]
- Takagi T, Taniguchi T, Yamamoto Y, Shibatani T. Molecular cloning of the L-phenylalanine transaminase gene from Paracoccus denitrificans in Escherichia coli K-12. Biotechnol Appl Biochem. 1991 Feb;13(1):112–119. [PubMed] [Google Scholar]
- Trach KA, Hoch JA. Multisensory activation of the phosphorelay initiating sporulation in Bacillus subtilis: identification and sequence of the protein kinase of the alternate pathway. Mol Microbiol. 1993 Apr;8(1):69–79. [PubMed] [Google Scholar]
- Udvardi MK, Kahn ML. Isolation and analysis of a cDNA clone that encodes an alfalfa (Medicago sativa) aspartate aminotransferase. Mol Gen Genet. 1991 Dec;231(1):97–105. [PubMed] [Google Scholar]
- Watson RJ, Rastogi VK. Cloning and nucleotide sequencing of Rhizobium meliloti aminotransferase genes: an aspartate aminotransferase required for symbiotic nitrogen fixation is atypical. J Bacteriol. 1993 Apr;175(7):1919–1928. [PMC free article] [PubMed] [Google Scholar]
- Ycas M. On earlier states of the biochemical system. J Theor Biol. 1974 Mar;44(1):145–160. [PubMed] [Google Scholar]
- Zhao G, Xia T, Song J, Jensen RA. Pseudomonas aeruginosa possesses homologues of mammalian phenylalanine hydroxylase and 4 alpha-carbinolamine dehydratase/DCoH as part of a three-component gene cluster. Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1366–1370. [PMC free article] [PubMed] [Google Scholar]
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