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Protein Family Models

Protein Family Models is a collection of models representing homologous proteins with a common function. It includes conserved domain architecture, hidden Markov models and BlastRules.

Using Protein Family Models

• What are Protein Family Models?
• How to search the Protein Family Model database?
• Where to access the data?
• Publications

Tools

• SPARCLE and RPS-BLAST
• CD-Search
• Batch CD-Search
• BLAST
• HMM Search
• The Prokaryotic Genome Annotation Pipeline (PGAP)
• Stand-alone PGAP

Other Resources

• Entrez Protein
• Identical Protein Groups (IPG)

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