Evolution of EF-hand calcium-modulated proteins. II. Domains of several subfamilies have diverse evolutionary histories - PubMed (original) (raw)
Review
doi: 10.1007/BF00162998.
Collaborators, Affiliations
- PMID: 1602495
- DOI: 10.1007/BF00162998
Review
Evolution of EF-hand calcium-modulated proteins. II. Domains of several subfamilies have diverse evolutionary histories
S Nakayama et al. J Mol Evol. 1992 May.
Abstract
In the first report in this series we described the relationships and evolution of 152 individual proteins of the EF-hand subfamilies. Here we add 66 additional proteins and define eight (CDC, TPNV, CLNB, LPS, DGK, 1F8, VIS, TCBP) new subfamilies and seven (CAL, SQUD, CDPK, EFH5, TPP, LAV, CRGP) new unique proteins, which we assume represent new subfamilies. The main focus of this study is the classification of individual EF-hand domains. Five subfamilies--calmodulin, troponin C, essential light chain, regulatory light chain, CDC31/caltractin--and three uniques--call, squidulin, and calcium-dependent protein kinase--are congruent in that all evolved from a common four-domain precursor. In contrast calpain and sarcoplasmic calcium-binding protein (SARC) each evolved from its own one-domain precursor. The remaining 19 subfamilies and uniques appear to have evolved by translocation and splicing of genes encoding the EF-hand domains that were precursors to the congruent eight and to calpain and to SARC. The rates of evolution of the EF-hand domains are slower following formation of the subfamilies and establishment of their functions. Subfamilies are not readily classified by patterns of calcium coordination, interdomain linker stability, and glycine and proline distribution. There are many homoplasies indicating that similar variants of the EF-hand evolved by independent pathways.
Similar articles
- Classification and evolution of EF-hand proteins.
Kawasaki H, Nakayama S, Kretsinger RH. Kawasaki H, et al. Biometals. 1998 Dec;11(4):277-95. doi: 10.1023/a:1009282307967. Biometals. 1998. PMID: 10191494 Review. - Evolution of EF-hand calcium-modulated proteins. I. Relationships based on amino acid sequences.
Moncrief ND, Kretsinger RH, Goodman M. Moncrief ND, et al. J Mol Evol. 1990 Jun;30(6):522-62. doi: 10.1007/BF02101108. J Mol Evol. 1990. PMID: 2115931 - Evolution of EF-hand calcium-modulated proteins. IV. Exon shuffling did not determine the domain compositions of EF-hand proteins.
Kretsinger RH, Nakayama S. Kretsinger RH, et al. J Mol Evol. 1993 May;36(5):477-88. doi: 10.1007/BF02406723. J Mol Evol. 1993. PMID: 8510180 - Evolution of the EF-hand family of proteins.
Nakayama S, Kretsinger RH. Nakayama S, et al. Annu Rev Biophys Biomol Struct. 1994;23:473-507. doi: 10.1146/annurev.bb.23.060194.002353. Annu Rev Biophys Biomol Struct. 1994. PMID: 7919790 Review. No abstract available.
Cited by
- What Is Parvalbumin for?
Permyakov EA, Uversky VN. Permyakov EA, et al. Biomolecules. 2022 Apr 30;12(5):656. doi: 10.3390/biom12050656. Biomolecules. 2022. PMID: 35625584 Free PMC article. Review. - Novel protein from larval sponge cells, ilborin, is related to energy turnover and calcium binding and is conserved among marine invertebrates.
Borisenko I, Daugavet M, Ereskovsky A, Lavrov A, Podgornaya O. Borisenko I, et al. Open Biol. 2022 Feb;12(2):210336. doi: 10.1098/rsob.210336. Epub 2022 Feb 23. Open Biol. 2022. PMID: 35193395 Free PMC article. - Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities.
Coesel SN, Durham BP, Groussman RD, Hu SK, Caron DA, Morales RL, Ribalet F, Armbrust EV. Coesel SN, et al. Proc Natl Acad Sci U S A. 2021 Feb 9;118(6):e2011038118. doi: 10.1073/pnas.2011038118. Proc Natl Acad Sci U S A. 2021. PMID: 33547239 Free PMC article. - The evolutionary landscape of the Rab family in chordates.
Coppola U, Ristoratore F, Albalat R, D'Aniello S. Coppola U, et al. Cell Mol Life Sci. 2019 Oct;76(20):4117-4130. doi: 10.1007/s00018-019-03103-7. Epub 2019 Apr 26. Cell Mol Life Sci. 2019. PMID: 31028425 Free PMC article. - Structural and functional diversity of EF-hand proteins: Evolutionary perspectives.
Kawasaki H, Kretsinger RH. Kawasaki H, et al. Protein Sci. 2017 Oct;26(10):1898-1920. doi: 10.1002/pro.3233. Epub 2017 Jul 27. Protein Sci. 2017. PMID: 28707401 Free PMC article. Review.
References
- J Mol Biol. 1988 Nov 5;204(1):191-204 - PubMed
- Nucleic Acids Res. 1989 Dec 25;17(24):10502 - PubMed
- J Biol Chem. 1989 Apr 15;264(11):6580-6 - PubMed
- Science. 1985 Feb 22;227(4689):945-8 - PubMed
- J Biol Chem. 1989 Nov 5;264(31):18627-31 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Other Literature Sources
Molecular Biology Databases
Miscellaneous