Inference for cumulative incidence functions with informatively coarsened discrete event-time data - PubMed (original) (raw)
Inference for cumulative incidence functions with informatively coarsened discrete event-time data
Michelle Shardell et al. Stat Med. 2008.
Abstract
We consider the problem of comparing cumulative incidence functions of non-mortality events in the presence of informative coarsening and the competing risk of death. We extend frequentist-based hypothesis tests previously developed for non-informative coarsening and propose a novel Bayesian method based on comparing a posterior parameter transformation with its expected distribution under the null hypothesis of equal cumulative incidence functions. Both methods use estimates derived by extending previously published estimation procedures to accommodate censoring by death. The data structure and analysis goal are exemplified by the AIDS Link to the Intravenous Experience (ALIVE) study, where researchers are interested in comparing incidence of human immunodeficiency virus seroconversion by risk behavior categories. Coarsening in the forms of interval and right censoring and censoring by death in ALIVE is thought to be informative; thus, we perform a sensitivity analysis by incorporating elicited expert information about the relationship between seroconversion and censoring into the model.
Figures
Figure 1
Simulation study results, Ng = 500, Nsim = 1000. Empirical distribution of integrated weighted difference (ID, w = 1; IWD, (w = w*) and logrank (LR) tests compared to a chi-square distribution (two groups, df=1; three groups, df=2), with and without a competing risk.
Figure 2
ALIVE Bayesian results. Posterior (solid line, needle sharers; dashed line, non-sharers) and prior (dotted line) densities of one-, five-, and ten-year cumulative incidence.
Figure 3
ALIVE Bayesian Inference. Posterior density for ZLR(p) (solid line) and ZIWD(p) (dashed line) parameter transformations with standard normal kernel (dotted line). Mean posterior (solid line, needle sharers; dashed line, non-sharers) and prior (dotted line) cumulative incidence.
References
- Heitjan DF, Rubin DB. Ignorability and coarse data. The Annals of Statistics. 1991;19:2244–2253.
- Heitjan DF. Ignorability and coarse data: Some biomedical examples. Biometrics. 1993;49:1099–1109. -PubMed
- Gill RD, van der Laan MJ, Robins JM. Coarsening at random: characterizations, conjectures and counter-examples. In: Lin DY, Fleming TR, editors. State of the Art in Survival Analysis. Springer; New York: 1997. pp. 255–294.
- Shardell M, Scharfstein DO, Bozzette SA. Survival curve estimation for informatively coarsened discrete event-time data. Statistics in Medicine. 2007;26:2184–202. -PubMed
- Zhang J, Heitjan DF. A simple local sensitivity analysis tool for nonignorable coarsening: application to dependent censoring. Biometrics. 2006;62:1260–1268. -PubMed
Publication types
MeSH terms
Grants and funding
- R37 DA004334/DA/NIDA NIH HHS/United States
- 5R01A132475/PHS HHS/United States
- R01 GM048704/GM/NIGMS NIH HHS/United States
- 1-R01-DA10184-01A2/DA/NIDA NIH HHS/United States
- R01 DA004334/DA/NIDA NIH HHS/United States
- R01 CA074112/CA/NCI NIH HHS/United States
- R01CA74112/CA/NCI NIH HHS/United States
- DA 04334/DA/NIDA NIH HHS/United States
- R01 AI078835/AI/NIAID NIH HHS/United States
- R56 DA004334/DA/NIDA NIH HHS/United States
- T32 AG000247/AG/NIA NIH HHS/United States
- 1-R01-MH56639-01A1/MH/NIMH NIH HHS/United States
- R01 AI032475/AI/NIAID NIH HHS/United States
- R01 MH056639/MH/NIMH NIH HHS/United States
- 1-R29-GM48704-04/GM/NIGMS NIH HHS/United States
- T32-AG00247/AG/NIA NIH HHS/United States
- R01 DA010184/DA/NIDA NIH HHS/United States
LinkOut - more resources
Full Text Sources