Computer graphic display method for visualizing three-dimensional biological structures - PubMed (original) (raw)

Computer graphic display method for visualizing three-dimensional biological structures

J Jiménez et al. Science. 1986.

Abstract

A computer graphic display method that produces two-dimensional perspective views of three-dimensional objects is presented. The method is applied to the reconstruction at a resolution of 2.2 nanometers of the neck of bacteriophage phi 29, obtained from transmission electron micrographs processed by the direct Fourier method. The combined use of directed illumination, reflectance models, color, and different levels of transparency provides a powerful tool for a better interpretation of the three-dimensional structure, allowing improved correlation with genetic, structural, and biochemical data.

PubMed Disclaimer

Similar articles

• Three-dimensional reconstruction of bacteriophage phi 29 neck particles at 2 X 2 nm resolution.
  Carazo JM, Santisteban A, Carrascosa JL. Carazo JM, et al. J Mol Biol. 1985 May 5;183(1):79-88. doi: 10.1016/0022-2836(85)90282-7. J Mol Biol. 1985. PMID: 4009722
• The reconstruction of a helical structure from projections applied to a phage tail.
  Cremers AF, Fischer JC, Mellema JE. Cremers AF, et al. Ultramicroscopy. 1979;4(1):91-6. doi: 10.1016/0304-3991(79)90011-1. Ultramicroscopy. 1979. PMID: 105439
• Structural localization of the proteins of the head to tail connecting region of bacteriophage phi 29.
  Carrascosa JL, Carazo JM, García N. Carrascosa JL, et al. Virology. 1983 Jan 15;124(1):133-43. Virology. 1983. PMID: 6401885
• [Three-dimensional reconstruction of bacterial viruses from electron microscopy data. Bacteriophage structure].
  Mikhaĭlov AM, Beliaeva NN, Kaftanova AS, Kornev AN. Mikhaĭlov AM, et al. Mol Gen Mikrobiol Virusol. 1989 Feb;(2):13-25. Mol Gen Mikrobiol Virusol. 1989. PMID: 2661997 Review. Russian.
• A new generation of the IMAGIC image processing system.
  van Heel M, Harauz G, Orlova EV, Schmidt R, Schatz M. van Heel M, et al. J Struct Biol. 1996 Jan-Feb;116(1):17-24. doi: 10.1006/jsbi.1996.0004. J Struct Biol. 1996. PMID: 8742718 Review.

Cited by

• Revolving ATPase motors as asymmetrical hexamers in translocating lengthy dsDNA via conformational changes and electrostatic interactions in phi29, T7, herpesvirus, mimivirus, E. coli, and Streptomyces.
  Weitao T, Grandinetti G, Guo P. Weitao T, et al. Exploration (Beijing). 2023 Feb 5;3(2):20210056. doi: 10.1002/EXP.20210056. eCollection 2023 Apr. Exploration (Beijing). 2023. PMID: 37324034 Free PMC article. Review.
• Mechanism of one-way traffic of hexameric phi29 DNA packaging motor with four electropositive relaying layers facilitating antiparallel revolution.
  Zhao Z, Khisamutdinov E, Schwartz C, Guo P. Zhao Z, et al. ACS Nano. 2013 May 28;7(5):4082-92. doi: 10.1021/nn4002775. Epub 2013 Mar 26. ACS Nano. 2013. PMID: 23510192 Free PMC article.
• Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system.
  Shu D, Zhang H, Jin J, Guo P. Shu D, et al. EMBO J. 2007 Jan 24;26(2):527-37. doi: 10.1038/sj.emboj.7601506. EMBO J. 2007. PMID: 17245435 Free PMC article.
• Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor.
  Haque F, Lunn J, Fang H, Smithrud D, Guo P. Haque F, et al. ACS Nano. 2012 Apr 24;6(4):3251-61. doi: 10.1021/nn3001615. Epub 2012 Apr 9. ACS Nano. 2012. PMID: 22458779 Free PMC article.
• Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.
  Guo P, Noji H, Yengo CM, Zhao Z, Grainge I. Guo P, et al. Microbiol Mol Biol Rev. 2016 Jan 27;80(1):161-86. doi: 10.1128/MMBR.00056-15. Print 2016 Mar. Microbiol Mol Biol Rev. 2016. PMID: 26819321 Free PMC article. Review.

Publication types

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Atypon