Install log for 'cartogramR' (original) (raw)
- installing source package ‘cartogramR’ ... ** package ‘cartogramR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (GCC) 14.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src' gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c caracmap.c -o caracmap.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cartogram.c -o cartogram.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cartogramR.c -o cartogramR.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c checkring.c -o checkring.o In file included from checkring.c:13: checkring.c: In function 'checkring': /data/gannet/ripley/R/R-devel/include/Rinternals.h:388:25: warning: 'rlistcoord2' may be used uninitialized [-Wmaybe-uninitialized] 388 | #define PROTECT(s) Rf_protect(s) | ^~~~~~~~~~~~~
checkring.c:148:35: note: in expansion of macro 'PROTECT' 148 | if (change) rlistmulti2 = PROTECT(VECTOR_ELT(rlistcoord2, j)); | ^~~~~~~ checkring.c:86:8: note: 'rlistcoord2' was declared here 86 | SEXP rlistcoord2, rcoordvert2, rlistmulti2; | ^~~~~~~~~~~ /data/gannet/ripley/R/R-devel/include/Rinternals.h:388:25: warning: 'rlistmulti2' may be used uninitialized [-Wmaybe-uninitialized] 388 | #define PROTECT(s) Rf_protect(s) | ^~~~~~~~~~~~~ checkring.c:155:37: note: in expansion of macro 'PROTECT' 155 | if (change) rcoordvert2 = PROTECT(VECTOR_ELT(rlistmulti2, jj)); | ^~~~~~~ checkring.c:86:35: note: 'rlistmulti2' was declared here 86 | SEXP rlistcoord2, rcoordvert2, rlistmulti2; | ^~~~~~~~~~~ gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dcn.c -o dcn.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c diff_integrate.c -o diff_integrate.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ffb_integrate.c -o ffb_integrate.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c fill_with_density.c -o fill_with_density.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c geomcarto.c -o geomcarto.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gridanalysis.c -o gridanalysis.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c inside_functions.c -o inside_functions.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c interpol2.c -o interpol2.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c invcarto.c -o invcarto.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c iocartogramR.c -o iocartogramR.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c makegraticule.c -o makegraticule.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cleancall/include' -I/usr/local/include -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c read_gen.c -o read_gen.o gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o cartogramR.so caracmap.o cartogram.o cartogramR.o checkring.o dcn.o diff_integrate.o ffb_integrate.o fill_with_density.o geomcarto.o gridanalysis.o init.o inside_functions.o interpol2.o invcarto.o iocartogramR.o makegraticule.o read_gen.o -lfftw3 -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/cartogramR/src' installing to /data/gannet/ripley/R/packages/tests-devel/cartogramR.Rcheck/00LOCK-cartogramR/00new/cartogramR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path
- DONE (cartogramR)