RCSB PDB - 2O8W: Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors (original) (raw)
2O8W | pdb_00002o8w
Crystal Structure and Binding Epitopes of Urokinase-type Plasminogen Activator (C122A/N145Q/S195A) in complex with Inhibitors
This is version 1.4 of the entry. See complete history.
Macromolecule Content
- Total Structure Weight: 28.85 kDa
- Atom Count: 2,252
- Modelled Residue Count: 245
- Deposited Residue Count: 253
- Unique protein chains: 1
Find similar proteins by:
(by identity cutoff) | 3D Structure
| Binding Affinity Annotations | ||
|---|---|---|
| ID | Source | Binding Affinity |
| PL0 | BindingDB: 2O8W | Ki: min: 2.06e+4, max: 2.06e+4 (nM) from 2 assay(s) |
| IC50: 2.00e+4 (nM) from 1 assay(s) |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.255 (Depositor), 0.250 (DCC)
- R-Value Work: 0.213 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.213 (Depositor)
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.875 | α = 90 |
| b = 120.875 | β = 90 |
| c = 42.591 | γ = 120 |
Software Package:
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PROTEUM PLUS | data collection |
| PROTEUM PLUS | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
Revision History (Full details and data files)
- Version 1.0: 2007-12-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-11-10
Changes: Database references, Derived calculations - Version 1.3: 2023-12-27
Changes: Data collection - Version 1.4: 2024-11-20
Changes: Structure summary