RCSB PDB - 4FUB: Crystal Structure of the Urokinase (original) (raw)

4FUB | pdb_00004fub

Crystal Structure of the Urokinase

This is version 1.2 of the entry. See complete history.

Macromolecule Content

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(by identity cutoff) | 3D Structure

Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
15PQuery on 15PDownload Ideal Coordinates CCD File J [auth A] **POLYETHYLENE GLYCOL (N=34)**C69 H140 O35VUYXVWGKCKTUMF-UHFFFAOYSA-N Interactions Interactions & Density
4UPQuery on 4UPDownload Ideal Coordinates CCD File B [auth A] 6-[(2S,3S)-3-phenyloxiran-2-yl]naphthalene-2-carboximidamideC19 H16 N2 ORZYGGGSOUBZFKW-ROUUACIJSA-N Interactions Interactions & Density
SINQuery on SINDownload Ideal Coordinates CCD File D [auth A] SUCCINIC ACIDC4 H6 O4KDYFGRWQOYBRFD-UHFFFAOYSA-N Interactions Interactions & Density
SO4Query on SO4Download Ideal Coordinates CCD File C [auth A] SULFATE IONO4 SQAOWNCQODCNURD-UHFFFAOYSA-L Interactions Interactions & Density
GOLQuery on GOLDownload Ideal Coordinates CCD File E [auth A]F [auth A]G [auth A]H [auth A]I [auth A]E [auth A],F [auth A],G [auth A],H [auth A],I [auth A],K [auth A] GLYCEROLC3 H8 O3PEDCQBHIVMGVHV-UHFFFAOYSA-N Interactions Interactions & Density
ACTQuery on ACTDownload Ideal Coordinates CCD File L [auth A],M [auth A],N [auth A],O [auth A],P [auth A] ACETATE IONC2 H3 O2QTBSBXVTEAMEQO-UHFFFAOYSA-M Interactions Interactions & Density
Binding Affinity Annotations
ID Source Binding Affinity
4UP BindingDB: 4FUB Ki: min: 610, max: 631 (nM) from 3 assay(s)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length ( Å ) Angle ( ˚ )
a = 55.1 α = 90
b = 52.4 β = 90
c = 80.25 γ = 90

Software Package:

Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
BUSTER-TNT refinement
PDB_EXTRACT data extraction
BUSTER refinement

Revision History (Full details and data files)