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* using log directory ‘/data/gannet/ripley/R/packages/tests-ATLAS/WeightIt.Rcheck’ * using R Under development (unstable) (2024-10-04 r87208) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Fedora Linux 36 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘WeightIt/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘WeightIt’ version ‘1.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘WeightIt’ can be installed ... [32s/84s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [78s/212s] OK * checking Rd files ... [8s/27s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [33s/97s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ [3m/12m] [3m/12m] ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(WeightIt) > > test_check("WeightIt") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 319 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-ordinal_weightit.R:120:3'): Binary treatment ───────────────── vcov(fit0) (`actual`) not equal to vcov(fit) (`expected`). actual vs expected [, 1] [, 2] [, 3] [, 4] [, 5] [, 6] [, 7] [, 8] [, 9] [,10] [,11] [,12] [,13] [,14] - actual[1, ] 5.200993e-02 -0.0029767030 0.0009715002 0.0004143515 0.0009404746 0.0112541486 -0.0003404219 -4.097927e-06 0.003468791 -0.0081636116 -0.0502652592 0.0106054204 0.012279398 0.0107617669 + expected[1, ] 5.200993e-02 -0.0029767031 0.0009715002 0.0004143516 0.0009404746 0.0112541494 -0.0003404216 -4.096196e-06 0.003468789 -0.0081636138 -0.0502652587 0.0106054212 0.012279399 0.0107617674 - actual[2, ] -2.976703e-03 0.0060737614 0.0004061828 0.0007475286 -0.0001774526 -0.0018535302 -0.0072615591 -1.072883e-03 -0.001900843 0.0013807699 0.0054081573 -0.0055553190 -0.001711201 0.0005855461 + expected[2, ] -2.976703e-03 0.0060737614 0.0004061829 0.0007475287 -0.0001774526 -0.0018535303 -0.0072615594 -1.072883e-03 -0.001900843 0.0013807699 0.0054081578 -0.0055553193 -0.001711201 0.0005855462 - actual[3, ] 9.715002e-04 0.0004061828 0.0034287806 0.0006714569 0.0004203012 0.0013038581 -0.0018072337 -4.173942e-03 -0.001971944 0.0006454046 0.0022277259 -0.0016067337 0.001953669 0.0041294903 + expected[3, ] 9.715002e-04 0.0004061829 0.0034287807 0.0006714569 0.0004203012 0.0013038581 -0.0018072340 -4.173942e-03 -0.001971945 0.0006454046 0.0022277261 -0.0016067339 0.001953669 0.0041294904 - actual[4, ] 4.143515e-04 0.0007475286 0.0006714569 0.0031923504 0.0004046722 0.0009812734 -0.0019151415 -1.322892e-03 -0.004282060 0.0005499971 0.0020336758 -0.0017708318 0.001302717 0.0031713489 + expected[4, ] 4.143516e-04 0.0007475287 0.0006714569 0.0031923505 0.0004046723 0.0009812734 -0.0019151417 -1.322892e-03 -0.004282061 0.0005499971 0.0020336759 -0.0017708319 0.001302717 0.0031713490 - actual[5, ] 9.404746e-04 -0.0001774526 0.0004203012 0.0004046722 0.0029982006 0.0016346189 -0.0006135438 -8.934457e-04 -0.001149249 -0.0023912252 0.0001967919 -0.0001939344 0.001398828 0.0024487903 + expected[5, ] 9.404746e-04 -0.0001774526 0.0004203012 0.0004046723 0.0029982006 0.0016346189 -0.0006135439 -8.934457e-04 -0.001149249 -0.0023912252 0.0001967920 -0.0001939344 0.001398828 0.0024487904 - actual[6, ] 1.125415e-02 -0.0018535302 0.0013038581 0.0009812734 0.0016346189 0.0144494315 0.0005913103 -1.866692e-03 -0.002142233 -0.0009707708 -0.0118460512 0.0091812827 0.011681412 0.0133594198 + expected[6, ] 1.125415e-02 -0.0018535303 0.0013038581 0.0009812734 0.0016346189 0.0144494319 0.0005913105 -1.866691e-03 -0.002142234 -0.0009707720 -0.0118460512 0.0091812832 0.011681412 0.0133594199 - actual[7, ] -3.404219e-04 -0.0072615591 -0.0018072337 -0.0019151415 -0.0006135438 0.0005913103 0.0328789048 1.415806e-03 0.011250649 0.0060699747 -0.0204431684 0.0098959704 -0.001513525 -0.0049859287 + expected[7, ] -3.404216e-04 -0.0072615594 -0.0018072340 -0.0019151417 -0.0006135439 0.0005913105 0.0328789061 1.415806e-03 0.011250651 0.0060699752 -0.0204431714 0.0098959712 -0.001513525 -0.0049859291 - actual[8, ] -4.097927e-06 -0.0010728828 -0.0041739417 -0.0013228920 -0.0008934457 -0.0018666918 0.0014158060 3.821773e-02 -0.023473075 -0.0212574738 0.0195837891 0.0034277177 -0.002441120 -0.0070461110 + expected[8, ] -4.096196e-06 -0.0010728829 -0.0041739417 -0.0013228920 -0.0008934457 -0.0018666910 0.0014158057 3.821773e-02 -0.023473074 -0.0212574725 0.0195837860 0.0034277186 -0.002441119 -0.0070461104 - actual[9, ] 3.468791e-03 -0.0019008430 -0.0019719444 -0.0042820605 -0.0011492490 -0.0021422326 0.0112506490 -2.347308e-02 0.063410169 0.0255062650 -0.0437522404 0.0068941540 -0.006039813 -0.0060628992 + expected[9, ] 3.468789e-03 -0.0019008432 -0.0019719447 -0.0042820607 -0.0011492492 -0.0021422340 0.0112506506 -2.347307e-02 0.063410170 0.0255062647 -0.0437522407 0.0068941534 -0.006039815 -0.0060629011 - actual[10, ] -8.163612e-03 0.0013807699 0.0006454046 0.0005499971 -0.0023912252 -0.0009707708 0.0060699747 -2.125747e-02 0.025506265 0.0490844334 -0.0287599988 -0.0017122918 -0.002658491 0.0030384255 + expected[10, ] -8.163614e-03 0.0013807699 0.0006454046 0.0005499971 -0.0023912252 -0.0009707720 0.0060699752 -2.125747e-02 0.025506265 0.0490844320 -0.0287599957 -0.0017122930 -0.002658492 0.0030384245 and 4 more ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 319 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [162s/391s] OK * checking PDF version of manual ... [21s/56s] OK * checking HTML version of manual ... [12s/37s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/data/gannet/ripley/R/packages/tests-ATLAS/WeightIt.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 30:42.34, 584.03 + 31.80