PMD and Solo-WCGW CpGs (original) (raw)

TCGA WGBS, PMD and Solo-WCGW CpGs

Annotation data from Zhou, Dinh et al. Nature Genetics 2018

Solo-WCGW CpGs and PMD Definitions

Human hg19

Coordinates of Solo-WCGW CpGs Genomewide

Coordinates of Solo-WCGW CpGs in common PMDs

Coordinates of PMDs/HMDs and common PMDs/HMDs

View Annotation in UCSC Genome Browser.

Human hg38

Coordinates of Solo-WCGW CpGs Genomewide

Coordinates of Solo-WCGW CpGs in common PMDs

Coordinates of PMDs/HMDs and common PMDs/HMDs

View Annotation in UCSC Genome Browser.

Mouse mm10

Coordinates of Solo-WCGW CpGs Genomewide

Coordinates of Solo-WCGW in common PMDs

Coordinates of PMDs/HMDs and common PMDs/HMDs

View Annotation in UCSC Genome Browser.

Mouse mm39

Coordinates of Solo-WCGW CpGs Genomewide

Infinium HumanMethylation BeadChip

HM450 probes for Solo-WCGW CpGs in common PMDs

HM450 probes for Solo-WCGW CpGs in common HMDs

EPIC probes for Solo-WCGW CpGs in common PMDs

EPIC probes for Solo-WCGW CpGs in common HMDs

EPICv2 probes for Solo-WCGW CpGs in common PMDs

EPICv2 probes for Solo-WCGW CpGs in common HMDs

All TCGA HM450 common PMD and HMD depth based on Solo-WCGW Methylation Mean

TCGA Cancer Methylomes

Human hg19

Methylomes in UCSC Genome Browser

Methylation Bed Files (4th column: methylation level; 5th column: sequencing depth; 6th column: C and G before merging)

Note: a known naming typo/mismatch: COAD_3158/COAD_N3158 should be COAD_3518/COAD_N3518

Human hg38

Methylomes in UCSC Genome Browser

Methylation Bed Files (4th column: methylation level; 5th column: sequencing depth)

MultiQC Reports (BISCUIT, FastQC etc).

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