anndata.AnnData.to_df (original) (raw)

• .rst

Contents

• AnnData.to_df()

anndata.AnnData.to_df#

AnnData.to_df(layer=None)[source]#

Generate shallow DataFrame.

The data matrix X is returned asDataFrame, where obs_names initializes the index, and var_names the columns.

• No annotations are maintained in the returned object.
• The data matrix is densified in case it is sparse.

Parameters:

layer str | None (default: None)

Key for .layers.

Return type:

DataFrame

Returns:

Pandas DataFrame of specified data matrix.

Contents

• AnnData.to_df()