ak.behavior — Awkward Array 2.8.2 documentation (original) (raw)

ak.behavior#

Motivation#

A data structure is defined both in terms of the information it encodes and in how it can be used. For example, a hash-table is not just a buffer, it’s also the “get” and “set” operations that make the buffer usable as a key-value store. Awkward Arrays have a suite of operations for transforming tree structures into new tree structures, but an application of these structures to a data analysis problem should be able to interpret them as objects in the analysis domain, such as latitude-longitude coordinates in geographical studies or Lorentz vectors in particle physics.

Object-oriented programming unites data with its operations. This is a conceptual improvement for data analysts because functions like “distance between this latitude-longitude point and another on a spherical globe” can be bound to the objects that represent latitude-longitude points. It matches the way that data analysts usually think about their data.

However, if these methods are saved in the data, or are written in a way that will only work for one version of the data structures, then it becomes difficult to work with large datasets. Old data that do not “fit” the new methods would have to be converted, or the analysis would have to be broken into different cases for each data generation. This problem is known as schema evolution, and there are many solutions to it.

The approach taken by the Awkward Array library is to encode very little interpretation into the data themselves and apply an interpretation as late as possible. Thus, a latitude-longitude record might be stamped with the name "latlon", but the operations on it are added immediately before the user wants them. These operations can be written in such a way that they only require the "latlon" to have lat and lon fields, so different versions of the data can have additional fields or even be embedded in different structures.

Parameters and behaviors#

In Awkward Array, metadata are embedded in data using an array node’sparameters, and parameter-dependent operations can be defined usingbehavior. A global mapping from parameters to behavior is in a dict calledbehavior:

import awkward as ak ak.behavior

but behavior dicts can also be loaded into ak.Array,ak.Record, and ak.ArrayBuilder objects as a constructor argument. Seeak.Array.behavior.

The general flow is

In large datasets, parameters may be hard to change (permanently, at least: on-the-fly parameter changes are easier), but behavior is easy to change (it is always assigned on-the-fly).

In the following example, we create two nested arrays of records with fields"x" and "y" and the records are named "point".

one = ak.Array([[{"x": 1, "y": 1.1}, {"x": 2, "y": 2.2}, {"x": 3, "y": 3.3}], [], [{"x": 4, "y": 4.4}, {"x": 5, "y": 5.5}], [{"x": 6, "y": 6.6}], [{"x": 7, "y": 7.7}, {"x": 8, "y": 8.8}, {"x": 9, "y": 9.9}]], with_name="point") two = ak.Array([[{"x": 0.9, "y": 1}, {"x": 2, "y": 2.2}, {"x": 2.9, "y": 3}], [], [{"x": 3.9, "y": 4}, {"x": 5, "y": 5.5}], [{"x": 5.9, "y": 6}], [{"x": 6.9, "y": 7}, {"x": 8, "y": 8.8}, {"x": 8.9, "y": 9}]], with_name="point")

The name appears in the way the type is presented as a string (a departure fromDatashape notation):

ak.type(one) 5 * var * point["x": int64, "y": float64]

and it may be accessed as the "__record__" property, through theak.Array.layout:

one.layout "point" one.layout.content.parameters {'record': 'point'}

We have to dig into the layout’s content because the "__record__" parameter is set on the ak.contents.RecordArray, which is buried inside of aak.contents.ListOffsetArray.

Alternatively, we can navigate to a single ak.Record first:

one[0, 0] <Record {x: 1, y: 1.1} type='point["x": int64, "y": float64]'> one[0, 0].layout.parameters {'record': 'point'}

Adding behavior to records#

Suppose we want the points in the above example to be able to calculate distances to other points. We can do this by creating a subclass ofak.Record that has the new methods and associating it with the "__record__" name.

class Point(ak.Record): def distance(self, other): return np.sqrt((self.x - other.x)**2 + (self.y - other.y)**2)

ak.behavior["point"] = Point

Now one[0, 0] is instantiated as a Point, rather than a ak.Record,

one[0, 0] <Point {x: 1, y: 1.1} type='point["x": int64, "y": float64]'>

and it has the distance method.

for xs, ys in zip(one, two): ... for x, y in zip(xs, ys): ... print(x.distance(y)) 0.14142135623730953 0.0 0.31622776601683783 0.4123105625617664 0.0 0.6082762530298216 0.7071067811865477 0.0 0.905538513813742

Looping over data in Python is inconvenient and slow; we want to compute quantities like this with array-at-a-time methods, but distance is bound to a ak.Record, not an ak.Array of records.

one.distance(two) AttributeError: no field named 'distance'

To add distance as a method on arrays of points, create a subclass ofak.Array and attach that as ak.behavior["*", "point"] for “array of points.”

class PointArray(ak.Array): def distance(self, other): return np.sqrt((self.x - other.x)**2 + (self.y - other.y)**2)

ak.behavior["*", "point"] = PointArray

Now one[0] is a PointArray and can compute distance on arrays at a time. Thanks to NumPy’suniversal function(ufunc) syntax, the expression is the same (and could perhaps be implemented once and used by both Point and PointArray).

one[0] <PointArray [{x: 1, y: 1.1}, ... {x: 3, y: 3.3}] type='3 * point["x": int64, "y"...'> one[0].distance(two[0]) <Array [0.141, 0, 0.316] type='3 * float64'>

one itself is also a PointArray, and the same applies.

one <Array [[{x: 1, y: 1.1}, ... x: 9, y: 9.9}]] type='5 * var * point["x": int64, "...'> one.distance(two) [[0.141, 0, 0.316], [], [0.412, 0], [0.608], [0.707, 0, 0.906]]

One last caveat: our one array was created before this behavior was assigned, so it needs to be recreated to be a member of the new class. The normal ak.Array constructor is sufficient for this. This is only an issue if you’re working interactively (but something to think about when debugging!).

one = ak.Array(one) two = ak.Array(two)

Now it works, and again we’re taking advantage of the fact that the expression for distance based on ufuncs works equally well on Awkward Arrays.

one <PointArray [[{x: 1, y: 1.1}, ... x: 9, y: 9.9}]] type='5 * var * point["x": int...'> one.distance(two) <Array [[0.141, 0, 0.316, ... 0.707, 0, 0.906]] type='5 * var * float64'>

In most cases, you want to apply array-of-records for all levels of list-depth: use ak.behavior["*", record_name].

Overriding NumPy ufuncs and binary operators#

The ak.Array class overrides Python’s binary operators with the equivalent ufuncs, so __eq__ actually calls numpy.equal, for instance. This is also true of other basic functions, like __abs__ for overridingabs() with numpy.absolute. Each ufunc is then passed down to the leaves (deepest sub-elements) of an Awkward data structure.

For example,

ak.Array([[1, 2, 3], [], [4]]) == ak.Array([[3, 2, 1], [], [4]]) <Array [[False, True, False], [], [True]] type='3 * var * bool'>

However, this does not apply to records or named types until they are explicitly overridden:

one == two Traceback (most recent call last): File "", line 1, in ... ValueError: no overloads for custom types: equal(point, point)

We might want to take an object-oriented view in which the == operation applies to points, regardless of how deeply they are nested. If we try to do it by adding __eq__ as a method on PointArray, it would work if thePointArray is the top of the data structure, but not if it’s nested within another structure.

Instead, we should override numpy.equal itself. Custom ufunc overrides are checked at every step in broadcasting, so the override would be applied if point objects are discovered at any level.

def point_equal(left, right): return np.logical_and(left.x == right.x, left.y == right.y)

ak.behavior[np.equal, "point", "point"] = point_equal

The above should be read as “override :data`np.equal` for cases in which both arguments are "point".”

ak.to_list(one == two) [[False, True, False], [], [False, True], [False], [False, True, False]]

Similarly for overriding abs()

def point_abs(point): ... return np.sqrt(point.x2 + point.y2) ... ak.behavior[np.absolute, "point"] = point_abs ak.to_list(abs(one)) [[1.4866068747318506, 2.973213749463701, 4.459820624195552], [], [5.946427498927402, 7.433034373659253], [8.919641248391104], [10.406248123122953, 11.892854997854805, 13.379461872586655]]

and all other ufuncs.

If you need a placeholder for “any number,” use numbers.Real,numbers.Integral, etc. Non-arrays are resolved by type; builtin Python numbers and NumPy numbers are subclasses of the generic number types in thenumbers library.

Also, for commutative operations, be sure to override both operator orders. (Function signatures are matched to ak.behavior using multiple dispatch.)

import numbers def point_lmult(point, scalar): ... return ak.Array({"x": point.x * scalar, "y": point.y * scalar}) ... def point_rmult(scalar, point): ... return point_lmult(point, scalar) ... ak.behavior[np.multiply, "point", numbers.Real] = point_lmult ak.behavior[np.multiply, numbers.Real, "point"] = point_rmult ak.to_list(one * 10) [[{'x': 10, 'y': 11.0}, {'x': 20, 'y': 22.0}, {'x': 30, 'y': 33.0}], [], [{'x': 40, 'y': 44.0}, {'x': 50, 'y': 55.0}], [{'x': 60, 'y': 66.0}], [{'x': 70, 'y': 77.0}, {'x': 80, 'y': 88.0}, {'x': 90, 'y': 99.0}]]

If you need to override ufuncs in more generality, you can use thenumpy.ufunc interface:

def apply_ufunc(ufunc, method, args, kwargs): ... if ufunc in (np.sin, np.cos, np.tan): ... x = ufunc(args[0].x) ... y = ufunc(args[0].y) ... return ak.Array({"x": x, "y": y}) ... else: ... return NotImplemented ... ak.behavior[np.ufunc, "point"] = apply_ufunc ak.to_list(np.sin(one)) [[{'x': 0.8414709848078965, 'y': 0.8912073600614354}, {'x': 0.9092974268256817, 'y': 0.8084964038195901}, {'x': 0.1411200080598672, 'y': -0.1577456941432482}], [], [{'x': -0.7568024953079282, 'y': -0.951602073889516}, {'x': -0.9589242746631385, 'y': -0.7055403255703919}], [{'x': -0.27941549819892586, 'y': 0.31154136351337786}], [{'x': 0.6569865987187891, 'y': 0.9881682338770004}, {'x': 0.9893582466233818, 'y': 0.5849171928917617}, {'x': 0.4121184852417566, 'y': -0.45753589377532133}]] np.sqrt(one) Traceback (most recent call last): File "", line 1, in ... ValueError: no overloads for custom types: sqrt(point)

But be forewarned: the ak.behavior[np.ufunc, name] syntax will match_any_ ufunc that has an array containing an array with type name anywhere in the argument list. The first array in the argument list with type name will be matched instead of more detailed argument lists with type name at a later spot in the list. The “apply_ufunc” interface is greedy.

Overriding NumPy reducers#

In addition to ufuncs, it is also possible to override reducers on records. Consider a 2D vector that implements binary addition:

def vector_add(left, right): return ak.contents.RecordArray( [ ak.to_layout(left["rho"] + right["rho"]), ak.to_layout(left["phi"] + right["phi"]), ], ["rho", "phi"], parameters={"record": "Vector2D"}, )

ak.behavior[np.add, "Vector2D", "Vector2D"] = vector_add

Whilst the np.add overload permits binary addition of Vector2D objects,

vector = ak.Array( ... [[{"rho": -1.1, "phi": -0.1}, {"rho": 1.1, "phi": 0.1}], [{"rho": -2.2, "phi": 0.0}, {"rho": 3.1, "phi": 0.9}]], ... with_name="Vector2D", ... ) (vector + vector).show() [[{rho: -2.2, phi: -0.2}, {rho: 2.2, phi: 0.2}], [{rho: -4.4, phi: 0}, {rho: 6.2, phi: 1.8}]]

it does not permit the use of the ak.sum reducer:

ak.sum(vector, axis=-1) TypeError: no ak.sum overloads for custom types: rho, phi

This error occurred while calling

ak.sum(
    array = <Array [[{rho: -1.1, ...}, ...], ...] type='2 * var * Vecto...'>
    axis = -1
    keepdims = False
    mask_identity = False
    highlevel = True
    behavior = None
)

To implement support for reducers like ak.sum, we should override them with a behavior:

def vector_sum(vector, mask_identity): ... return ak.contents.RecordArray( ... [ ... ak.sum(vector["rho"], highlevel=False, axis=-1), ... ak.sum(vector["phi"], highlevel=False, axis=-1), ... ], ... ["rho", "phi"], ... parameters={"record": "Vector2D"}, ... ) ak.behavior[ak.sum, "Vector2D"] = vector_sum ak.sum(vector, axis=-1).show() [{rho: 0, phi: 0}, {rho: 0.9, phi: 0.9}]

Custom reducers are invoked with two arguments: a 2D array containing lists of records, and a boolean mask_identity indicating whether the reducer should introduce an option type (for reductions along empty sublists). If the reducer does not introduce an option type, and mask=True, Awkward will mask the result at the appropriate positions. The reducer should return an ak.Array or ak.contents.Content with the same number of elements as the input array. The reduction itself should be performed along axis=1, dropping the reduced dimension (i.e. keepdims=False).

Mixin decorators#

The pattern of adding additional properties and function overrides to records and arrays of records is quite common, and can be nicely described by the “mixin” idiom: a class with no constructor that is mixed with both the ak.Array and ak.Recordclass as to create new derived classes. The ak.mixin_class() and ak.mixin_class_method()python decorators assist with some of this boilerplate. Consider the Point class from above; we can implement all the functionality so far described as follows:

@ak.mixin_class(ak.behavior) class Point: def distance(self, other): return np.sqrt((self.x - other.x) ** 2 + (self.y - other.y) ** 2)

@ak.mixin_class_method(np.equal, {"Point"})
def point_equal(self, other):
    return np.logical_and(self.x == other.x, self.y == other.y)

@ak.mixin_class_method(np.abs)
def point_abs(self):
    return np.sqrt(self.x ** 2 + self.y ** 2)

The behavior name is taken as the mixin class name, e.g. here it is Point (as opposed to lowercase point previously). We can extend our implementation to allow Point types to be added by overriding the np.add ufunc (appending to our class definition):

class Point: # ...

@ak.mixin_class_method(np.add, {"Point"})
def point_add(self, other):
    return ak.zip(
        {"x": self.x + other.x, "y": self.y + other.y}, with_name="Point",
    )

The real power of using mixin classes comes from the ability to inherit behaviors. Consider a Point-like record that also has a weight field. Suppose that we want these WeightedPoint types to have the same distance and magnitude functionality, but only be considered equal when they have the same weight. Also, suppose we want the addition of two weighted points to give their weighted mean rather than a sum. We could implement such a class as follows:

@ak.mixin_class(ak.behavior) class WeightedPoint(Point): @ak.mixin_class_method(np.equal, {"WeightedPoint"}) def weighted_equal(self, other): return np.logical_and(self.point_equal(other), self.weight == other.weight)

@ak.mixin_class_method(np.add, {"WeightedPoint"})
def weighted_add(self, other):
    sumw = self.weight + other.weight
    return ak.zip(
        {
            "x": (self.x * self.weight + other.x * other.weight) / sumw,
            "y": (self.y * self.weight + other.y * other.weight) / sumw,
            "weight": sumw,
        },
        with_name="WeightedPoint",
    )

A footnote: in this implementation, adding a WeightedPoint and a Point returns a Point. One may wish to disable this by type-checking, since the functionalities are rather different.

Adding behavior to arrays#

Occasionally, you may want to add behavior to an array that does not contain records. Historically, this mechanism was used to help implement strings (although) strings have since been made a part of Awkward’s internals, alongside categorical types.

Awkward Array supports adding behaviors to the list-types in an array. Let’s suppose that one wishes to define a special list that defines a reversed() method, equivalent to array[..., ::-1].

First, one must define the behavior class

class ReversibleArray(ak.Array): def reversed(self): return self[..., ::-1]

To make this behavior class available to new arrays, it must be associated with its name

ak.behavior["reversible"] = ReversibleArray

One can then add the __list__ parameter to a list-type array to request this behavior class

reversible_list = ak.with_parameter([[1, 2, 3], [4], [5, 6, 7]], "list", "reversible") reversible_list.reversed() [[3, 2, 1], [4], [7, 6, 5]]

If this list is nested within another list, the array class will not be found:

nested_list = ak.unflatten(reversible_list, [2, 1]) nested_list.reversed() Traceback (most recent call last): File "", line 1, in ... AttributeError: no field named 'reversed'

Just like with records, we can register a “deep” array class that will be found for all levels of list-depth, using "*":

ak.behavior["*", "reversible"] = ReversibleArray nested_list = ak.unflatten(reversible_list, [2, 1]) nested_list.reversed() [[[3, 2, 1], [4]], [[7, 6, 5]]]

In ak.behaviors.string, string behaviors are assigned with lines like

ak.behavior["string"] = StringBehavior ak.behavior[np.equal, "string", "string"] = _string_equal

Custom type names#

To change the type-string representation of our custom list, a"__typestr__" behavior can be registered:

ak.behavior["typestr", "reversible"] = "a-reversible-list"

so that

ak.type(ak.with_parameter([[1, 2, 3], [4], [5, 6, 7]], "list", "reversible")) 3 * a-reversible-list

Overriding behavior in Numba#

Awkward Arrays can be arguments and return values of functions compiled withNumba. Since these functions run on low-level objects, most functionality must be reimplemented, including behavioral overrides.

The documentation onExtending Numbaintroduces typing, lowering, and models, which are necessary for reimplementing the behavior of a Python object in the compiled environment. To apply the same to records and arrays from an Awkward data structure, we use ak.behavior hooks that start with "__numba_typer__" and"__numba_lower__".

Case 1: Adding a property, such as rec.property_name.

ak.behavior["numba_typer", record_name, property_name] = typer ak.behavior["numba_lower", record_name, property_name] = lower

The typer function takes anak._connect._numba.arrayview.ArrayViewType() as its only argument and returns the property’s type.

The lower function takes the standard context, builder, sig, argsarguments and returns the lowered value. Given a Python function that takes one record and returns the property, the lower can be

def lower(context, builder, sig, args): return context.compile_internal(builder, function, sig, args)

Case 2: Adding a method, such as rec.method_name(arg0, arg1).

ak.behavior["numba_typer", record_name, method_name, ()] = typer ak.behavior["numba_lower", record_name, method_name, ()] = lower

The last item is an empty tuple, () (regardless of whether the method takes any arguments).

In this case, the typer takes anak._connect._numba.arrayview.ArrayViewType() as well as any arguments and returns the property’s type, and the sig and args in lowerinclude these arguments.

Case 3: Unary and binary operations, like -rec1 and rec1 + rec2.

ak.behavior["numba_typer", operator.neg, "rec1"] = typer ak.behavior["numba_lower", operator.neg, "rec1"] = lower

ak.behavior["numba_typer", "rec1", operator.add, "rec2"] = typer ak.behavior["numba_lower", "rec1", operator.add, "rec2"] = lower

Case 4: Completely replacing the Awkward record with an object in Numba.

If a fully defined model for the object already exists and Numba, we can have references to Awkward records or arrays simply become these objects, which implies some overhead from copying data and a loss of the functionality that Awkward would bring.

Strings, for instance, are replaced by Numba’s built-in string model so that all string operations will work, but Awkward operations like broadcasting characters will not.

For this case, the signatures are

parameters["record"] = record_name

ak.behavior["numba_typer", record_name] = typer ak.behavior["numba_lower", record_name] = lower

for an array one-level deep

ak.behavior["numba_typer", ".", record_name] = typer ak.behavior["numba_lower", ".", record_name] = lower

for an array any number of levels deep

ak.behavior["numba_typer", "", record_name] = typer ak.behavior["numba_lower", "", record_name] = lower

parameters["list"] = list_name

ak.behavior["numba_typer", list_name] = typer ak.behavior["numba_lower", list_name] = lower

The typer function takes anak._connect._numba.arrayview.ArrayViewType() as its only argument and returns the Numba type of its replacement, while the lowerfunction takes