qsea (development version) (original) (raw)

This is the development version of qsea; for the stable release version, seeqsea.

IP-seq data analysis and vizualization

Bioconductor version: Development (3.22)

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

Author: Matthias Lienhard [aut, cre] ORCID: 0000-0002-2549-3142 , Lukas Chavez [aut] ORCID: 0000-0002-8718-8848 , Ralf Herwig [aut] ORCID: 0000-0002-9335-1760

Maintainer: Matthias Lienhard

Citation (from within R, enter citation("qsea")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qsea")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qsea")

Details

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Package Archives

Follow Installation instructions to use this package in your R session.